Analysis of Ligand-Protein Contacts in PDB entry:
5VPF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 13 ligands in PDB entry 5VPF. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
EDO
A
301 41,2-ETHANEDIOL
lig 2
EDO
A
302 41,2-ETHANEDIOL
lig 3
EDO
A
303 41,2-ETHANEDIOL
lig 4
CL
A
304 1CHLORIDE ION
lig 5
EDO
B
401 41,2-ETHANEDIOL
lig 6
CL
B
402 1CHLORIDE ION
lig 7
NA
B
403 1SODIUM ION
lig 8
EDO
E
101 41,2-ETHANEDIOL
lig 9
EDO
F
101 41,2-ETHANEDIOL
lig 10
EDO
C
301 41,2-ETHANEDIOL
lig 11
PO4
C
302 5PHOSPHATE ION
lig 12
EDO
D
401 41,2-ETHANEDIOL
lig 13
PO4
G
101 5PHOSPHATE ION