Analysis of Ligand-Protein Contacts in PDB entry:
5VYQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 5VYQ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FON
A
301 34 L-GLUTAMIC ACID
lig 2
0FX
A
302 35DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE
lig 3
EDO
A
303 41,2-ETHANEDIOL
lig 4
EDO
A
304 41,2-ETHANEDIOL
lig 5
NA
A
305 1SODIUM ION
lig 6
NA
A
306 1SODIUM ION
lig 7
CL
A
307 1CHLORIDE ION
lig 8
EP1
A
308 16 ACID
lig 9
CL
A
309 1CHLORIDE ION
lig 10
NA
A
310 1SODIUM ION
lig 11
LI
A
311 1LITHIUM ION
lig 12
TYD
B
301 25THYMIDINE-5'-DIPHOSPHATE
lig 13
EDO
B
302 41,2-ETHANEDIOL
lig 14
EDO
B
303 41,2-ETHANEDIOL
lig 15
CL
B
304 1CHLORIDE ION
lig 16
EP1
B
305 16 ACID
lig 17
NA
B
306 1SODIUM ION
lig 18
K
B
307 1POTASSIUM ION