Analysis of Ligand-Protein Contacts in PDB entry:
5VZ2


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 5VZ2. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
9TS
H
1 6(2E)-PENT-2-ENOIC ACID
lig 2
YCP
H
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 3
MP8
H
7 8(4R)-4-METHYL-L-PROLINE
lig 4
9TS
J
1 6(2E)-PENT-2-ENOIC ACID
lig 5
YCP
J
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 6
MP8
J
7 8(4R)-4-METHYL-L-PROLINE
lig 7
9TS
O
1 6(2E)-PENT-2-ENOIC ACID
lig 8
YCP
O
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 9
MP8
O
7 8(4R)-4-METHYL-L-PROLINE
lig 10
9TS
P
1 6(2E)-PENT-2-ENOIC ACID
lig 11
YCP
P
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 12
MP8
P
7 8(4R)-4-METHYL-L-PROLINE
lig 13
9TS
Q
1 6(2E)-PENT-2-ENOIC ACID
lig 14
YCP
Q
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 15
MP8
Q
7 8(4R)-4-METHYL-L-PROLINE
lig 16
9TS
R
1 6(2E)-PENT-2-ENOIC ACID
lig 17
YCP
R
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 18
MP8
R
7 8(4R)-4-METHYL-L-PROLINE
lig 19
9TS
U
1 6(2E)-PENT-2-ENOIC ACID
lig 20
YCP
U
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 21
MP8
U
7 8(4R)-4-METHYL-L-PROLINE
lig 22
9TS
V
1 6(2E)-PENT-2-ENOIC ACID
lig 23
YCP
V
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 24
MP8
V
7 8(4R)-4-METHYL-L-PROLINE
lig 25
9TS
X
1 6(2E)-PENT-2-ENOIC ACID
lig 26
YCP
X
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 27
MP8
X
7 8(4R)-4-METHYL-L-PROLINE
lig 28
9TS
Y
1 6(2E)-PENT-2-ENOIC ACID
lig 29
YCP
Y
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 30
MP8
Y
7 8(4R)-4-METHYL-L-PROLINE
lig 31
9TS
Z
1 6(2E)-PENT-2-ENOIC ACID
lig 32
YCP
Z
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 33
MP8
Z
7 8(4R)-4-METHYL-L-PROLINE
lig 34
9TS
a
1 6(2E)-PENT-2-ENOIC ACID
lig 35
YCP
a
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 36
MP8
a
7 8(4R)-4-METHYL-L-PROLINE
lig 37
9TS
b
1 6(2E)-PENT-2-ENOIC ACID
lig 38
YCP
b
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 39
MP8
b
7 8(4R)-4-METHYL-L-PROLINE
lig 40
9TS
c
1 6(2E)-PENT-2-ENOIC ACID
lig 41
YCP
c
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 42
MP8
c
7 8(4R)-4-METHYL-L-PROLINE