Analysis of Ligand-Protein Contacts in PDB entry:
5WAU


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 62 ligands in PDB entry 5WAU. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
301 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
101 9N-ACETYL-SERINE
lig 5
FME
a
1 10N-FORMYLMETHIONINE
lig 6
FME
b
1 10N-FORMYLMETHIONINE
lig 7
TPO
g
11 11PHOSPHOTHREONINE
lig 8
SAC
i
101 9N-ACETYL-SERINE
lig 9
HEA
A
601 60HEME-A
lig 10
HEA
A
602 60HEME-A
lig 11
CU
A
603 1COPPER (II) ION
lig 12
MG
A
604 1MAGNESIUM ION
lig 13
NA
A
605 1SODIUM ION
lig 14
PGV
A
606 51 OCTADEC-11-ENOATE
lig 15
PGV
A
607 51 OCTADEC-11-ENOATE
lig 16
TGL
A
608 63TRISTEAROYLGLYCEROL
lig 17
TGL
A
609 63TRISTEAROYLGLYCEROL
lig 18
CMO
A
610 2CARBON MONOXIDE
lig 19
CUA
B
401 2DINUCLEAR COPPER ION
lig 20
CHD
B
402 29CHOLIC ACID
lig 21
CHD
C
301 29CHOLIC ACID
lig 22
PEK
C
302 53 11,14-TETRAENOATE
lig 23
PGV
C
303 51 OCTADEC-11-ENOATE
lig 24
PGV
C
304 51 OCTADEC-11-ENOATE
lig 25
CDL
C
305 100CARDIOLIPIN
lig 26
CHD
C
306 29CHOLIC ACID
lig 27
PEK
C
307 53 11,14-TETRAENOATE
lig 28
DMU
C
308 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 29
TGL
D
201 63TRISTEAROYLGLYCEROL
lig 30
PSC
E
201 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 31
ZN
F
101 1ZINC ION
lig 32
PEK
G
101 53 11,14-TETRAENOATE
lig 33
CDL
G
102 100CARDIOLIPIN
lig 34
CHD
G
103 29CHOLIC ACID
lig 35
CHD
J
101 29CHOLIC ACID
lig 36
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 37
HEA
a
601 60HEME-A
lig 38
HEA
a
602 60HEME-A
lig 39
CU
a
603 1COPPER (II) ION
lig 40
MG
a
604 1MAGNESIUM ION
lig 41
NA
a
605 1SODIUM ION
lig 42
PGV
a
606 51 OCTADEC-11-ENOATE
lig 43
PGV
a
607 51 OCTADEC-11-ENOATE
lig 44
CMO
a
608 2CARBON MONOXIDE
lig 45
CUA
b
301 2DINUCLEAR COPPER ION
lig 46
TGL
b
302 63TRISTEAROYLGLYCEROL
lig 47
PSC
b
303 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 48
PEK
c
301 53 11,14-TETRAENOATE
lig 49
PGV
c
302 51 OCTADEC-11-ENOATE
lig 50
CHD
c
303 29CHOLIC ACID
lig 51
PEK
c
304 53 11,14-TETRAENOATE
lig 52
PEK
c
305 53 11,14-TETRAENOATE
lig 53
PGV
c
306 51 OCTADEC-11-ENOATE
lig 54
CDL
c
307 100CARDIOLIPIN
lig 55
CHD
c
308 29CHOLIC ACID
lig 56
DMU
c
309 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 57
TGL
d
201 63TRISTEAROYLGLYCEROL
lig 58
ZN
f
101 1ZINC ION
lig 59
CDL
g
101 100CARDIOLIPIN
lig 60
CHD
j
101 29CHOLIC ACID
lig 61
TGL
l
101 63TRISTEAROYLGLYCEROL
lig 62
DMU
m
101 33DECYL-BETA-D-MALTOPYRANOSIDE