Analysis of Ligand-Protein Contacts in PDB entry:
5X3O


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 70 ligands in PDB entry 5X3O. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
65 10PHOSPHOSERINE
lig 2
DNE
D
1 8D-NORLEUCINE
lig 3
DGN
D
2 9D-GLUTAMINE
lig 4
DIL
D
3 8D-ISOLEUCINE
lig 5
DPN
D
4 11D-PHENYLALANINE
lig 6
DVA
D
5 7D-VALINE
lig 7
DLY
D
6 9D-LYSINE
lig 8
DTH
D
7 7D-THREONINE
lig 9
DLE
D
8 8D-LEUCINE
lig 10
DTH
D
9 7D-THREONINE
lig 11
DLY
D
11 9D-LYSINE
lig 12
DTH
D
12 7D-THREONINE
lig 13
DIL
D
13 8D-ISOLEUCINE
lig 14
DTH
D
14 7D-THREONINE
lig 15
DLE
D
15 8D-LEUCINE
lig 16
DGL
D
16 9D-GLUTAMIC ACID
lig 17
DVA
D
17 7D-VALINE
lig 18
DGL
D
18 9D-GLUTAMIC ACID
lig 19
DPR
D
19 7D-PROLINE
lig 20
DSN
D
20 6D-SERINE
lig 21
DAS
D
21 8D-ASPARTIC ACID
lig 22
DTH
D
22 7D-THREONINE
lig 23
DIL
D
23 8D-ISOLEUCINE
lig 24
DGL
D
24 9D-GLUTAMIC ACID
lig 25
DSG
D
25 8D-ASPARAGINE
lig 26
DVA
D
26 7D-VALINE
lig 27
DLY
D
27 9D-LYSINE
lig 28
DAL
D
28 5D-ALANINE
lig 29
DLY
D
29 9D-LYSINE
lig 30
DIL
D
30 8D-ISOLEUCINE
lig 31
DGN
D
31 9D-GLUTAMINE
lig 32
DAS
D
32 8D-ASPARTIC ACID
lig 33
DLY
D
33 9D-LYSINE
lig 34
DGL
D
34 9D-GLUTAMIC ACID
lig 35
DIL
D
36 8D-ISOLEUCINE
lig 36
DPR
D
37 7D-PROLINE
lig 37
DPR
D
38 7D-PROLINE
lig 38
DAS
D
39 8D-ASPARTIC ACID
lig 39
DGN
D
40 9D-GLUTAMINE
lig 40
DGN
D
41 9D-GLUTAMINE
lig 41
DAR
D
42 11D-ARGININE
lig 42
DLE
D
43 8D-LEUCINE
lig 43
DIL
D
44 8D-ISOLEUCINE
lig 44
DPN
D
45 11D-PHENYLALANINE
lig 45
DAL
D
46 5D-ALANINE
lig 46
DLY
D
48 9D-LYSINE
lig 47
DGN
D
49 9D-GLUTAMINE
lig 48
DLE
D
50 8D-LEUCINE
lig 49
DGL
D
51 9D-GLUTAMIC ACID
lig 50
DAS
D
52 8D-ASPARTIC ACID
lig 51
DAR
D
54 11D-ARGININE
lig 52
DTH
D
55 7D-THREONINE
lig 53
DLE
D
56 8D-LEUCINE
lig 54
DSN
D
57 6D-SERINE
lig 55
DAS
D
58 8D-ASPARTIC ACID
lig 56
DTY
D
59 12D-TYROSINE
lig 57
DSG
D
60 8D-ASPARAGINE
lig 58
DIL
D
61 8D-ISOLEUCINE
lig 59
DGN
D
62 9D-GLUTAMINE
lig 60
DLY
D
63 9D-LYSINE
lig 61
DGL
D
64 9D-GLUTAMIC ACID
lig 62
DGL
D
65 9D-GLUTAMIC ACID
lig 63
DTH
D
66 7D-THREONINE
lig 64
DLE
D
67 8D-LEUCINE
lig 65
DHI
D
68 10D-HISTIDINE
lig 66
DLE
D
69 8D-LEUCINE
lig 67
DVA
D
70 7D-VALINE
lig 68
DLE
D
71 8D-LEUCINE
lig 69
DAR
D
72 11D-ARGININE
lig 70
DLE
D
73 8D-LEUCINE