Analysis of Ligand-Protein Contacts in PDB entry:
5YDI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 23 ligands in PDB entry 5YDI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 13
NAG
A
801 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
A
802 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
GOL
A
803 6GLYCEROL
lig 16
GOL
A
804 6GLYCEROL
lig 17
NA
A
805 1SODIUM ION
lig 18
GOL
B
810 6GLYCEROL
lig 19
NA
B
811 1SODIUM ION
lig 20
NA
B
812 1SODIUM ION
lig 21
NAG
C
804 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
GOL
C
805 6GLYCEROL
lig 23
NA
C
806 1SODIUM ION