Analysis of Ligand-Protein Contacts in PDB entry:
5YJ0


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 62 ligands in PDB entry 5YJ0. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
EF2
A
501 19S-THALIDOMIDE
lig 2
ZN
A
502 1ZINC ION
lig 3
SO4
A
503 5SULFATE ION
lig 4
SO4
A
504 5SULFATE ION
lig 5
EF2
D
501 19S-THALIDOMIDE
lig 6
ZN
D
502 1ZINC ION
lig 7
SO4
D
503 5SULFATE ION
lig 8
SO4
D
504 5SULFATE ION
lig 9
EF2
G
501 19S-THALIDOMIDE
lig 10
ZN
G
502 1ZINC ION
lig 11
SO4
G
503 5SULFATE ION
lig 12
EF2
J
501 19S-THALIDOMIDE
lig 13
ZN
J
502 1ZINC ION
lig 14
SO4
J
503 5SULFATE ION
lig 15
SO4
J
504 5SULFATE ION
lig 16
SO4
J
505 5SULFATE ION
lig 17
EF2
M
501 19S-THALIDOMIDE
lig 18
ZN
M
502 1ZINC ION
lig 19
SO4
M
503 5SULFATE ION
lig 20
SO4
M
504 5SULFATE ION
lig 21
EF2
P
501 19S-THALIDOMIDE
lig 22
ZN
P
502 1ZINC ION
lig 23
SO4
P
503 5SULFATE ION
lig 24
EF2
S
501 19S-THALIDOMIDE
lig 25
ZN
S
502 1ZINC ION
lig 26
SO4
S
503 5SULFATE ION
lig 27
SO4
S
504 5SULFATE ION
lig 28
EF2
V
501 19S-THALIDOMIDE
lig 29
ZN
V
502 1ZINC ION
lig 30
SO4
V
503 5SULFATE ION
lig 31
SO4
V
504 5SULFATE ION
lig 32
SO4
V
505 5SULFATE ION
lig 33
EF2
Y
501 19S-THALIDOMIDE
lig 34
ZN
Y
502 1ZINC ION
lig 35
SO4
Y
503 5SULFATE ION
lig 36
EF2
b
501 19S-THALIDOMIDE
lig 37
ZN
b
502 1ZINC ION
lig 38
SO4
b
503 5SULFATE ION
lig 39
EF2
e
501 19S-THALIDOMIDE
lig 40
ZN
e
502 1ZINC ION
lig 41
SO4
e
503 5SULFATE ION
lig 42
SO4
e
504 5SULFATE ION
lig 43
SO4
e
505 5SULFATE ION
lig 44
EF2
h
501 19S-THALIDOMIDE
lig 45
ZN
h
502 1ZINC ION
lig 46
SO4
h
503 5SULFATE ION
lig 47
EF2
k
501 19S-THALIDOMIDE
lig 48
ZN
k
502 1ZINC ION
lig 49
SO4
k
503 5SULFATE ION
lig 50
SO4
k
504 5SULFATE ION
lig 51
EF2
n
501 19S-THALIDOMIDE
lig 52
ZN
n
502 1ZINC ION
lig 53
SO4
n
503 5SULFATE ION
lig 54
SO4
n
504 5SULFATE ION
lig 55
SO4
n
505 5SULFATE ION
lig 56
EF2
q
501 19S-THALIDOMIDE
lig 57
ZN
q
502 1ZINC ION
lig 58
SO4
q
503 5SULFATE ION
lig 59
EF2
t
501 19S-THALIDOMIDE
lig 60
ZN
t
502 1ZINC ION
lig 61
SO4
t
503 5SULFATE ION
lig 62
SO4
t
504 5SULFATE ION