Analysis of Ligand-Protein Contacts in PDB entry:
6B5E


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 29 ligands in PDB entry 6B5E. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DAU
A
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 2
MG
A
302 1MAGNESIUM ION
lig 3
TYD
A
303 25THYMIDINE-5'-DIPHOSPHATE
lig 4
CL
A
304 1CHLORIDE ION
lig 5
EDO
A
305 41,2-ETHANEDIOL
lig 6
DAU
B
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 7
MG
B
302 1MAGNESIUM ION
lig 8
MG
B
303 1MAGNESIUM ION
lig 9
TYD
B
304 25THYMIDINE-5'-DIPHOSPHATE
lig 10
NA
B
305 1SODIUM ION
lig 11
DAU
C
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 12
MG
C
302 1MAGNESIUM ION
lig 13
TYD
C
303 25THYMIDINE-5'-DIPHOSPHATE
lig 14
NA
C
304 1SODIUM ION
lig 15
DAU
D
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 16
MG
D
302 1MAGNESIUM ION
lig 17
TYD
D
303 25THYMIDINE-5'-DIPHOSPHATE
lig 18
DAU
E
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 19
DAU
E
302 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 20
MG
E
303 1MAGNESIUM ION
lig 21
DAU
F
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 22
DAU
F
302 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 23
MG
F
303 1MAGNESIUM ION
lig 24
DAU
G
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 25
MG
G
302 1MAGNESIUM ION
lig 26
TYD
G
303 25THYMIDINE-5'-DIPHOSPHATE
lig 27
DAU
H
301 362'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLU
lig 28
MG
H
302 1MAGNESIUM ION
lig 29
TYD
H
303 25THYMIDINE-5'-DIPHOSPHATE