Analysis of Ligand-Protein Contacts in PDB entry:
6F5M


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 28 ligands in PDB entry 6F5M. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
FUC
C
5 10ALPHA-L-FUCOPYRANOSE
lig 6
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 9
FUC
D
4 10ALPHA-L-FUCOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 15
FUC
E
6 10ALPHA-L-FUCOPYRANOSE
lig 16
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 19
FUC
F
4 10ALPHA-L-FUCOPYRANOSE
lig 20
SO4
A
410 5SULFATE ION
lig 21
SO4
A
411 5SULFATE ION
lig 22
ACT
A
412 4ACETATE ION
lig 23
ACT
A
413 4ACETATE ION
lig 24
CQH
A
414 34 THIAZOL-1-IUM-4-OLATE
lig 25
CQH
B
301 34 THIAZOL-1-IUM-4-OLATE
lig 26
SO4
B
312 5SULFATE ION
lig 27
SO4
B
313 5SULFATE ION
lig 28
ACT
B
314 4ACETATE ION