Analysis of Ligand-Protein Contacts in PDB entry:
6JBS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 80 ligands in PDB entry 6JBS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 7
BMA
F
4 11BETA-D-MANNOPYRANOSE
lig 8
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
F
6 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
F
7 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
MAN
G
3 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
G
6 11ALPHA-D-MANNOPYRANOSE
lig 17
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
MAN
H
3 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 23
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 24
MAN
I
5 11ALPHA-D-MANNOPYRANOSE
lig 25
MAN
I
6 11ALPHA-D-MANNOPYRANOSE
lig 26
MAN
I
7 11ALPHA-D-MANNOPYRANOSE
lig 27
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
MAN
K
3 11ALPHA-D-MANNOPYRANOSE
lig 32
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 35
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 36
MAN
L
5 11ALPHA-D-MANNOPYRANOSE
lig 37
MAN
L
6 11ALPHA-D-MANNOPYRANOSE
lig 38
MAN
L
7 11ALPHA-D-MANNOPYRANOSE
lig 39
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
MAN
M
3 11ALPHA-D-MANNOPYRANOSE
lig 42
BMA
M
4 11BETA-D-MANNOPYRANOSE
lig 43
MAN
M
5 11ALPHA-D-MANNOPYRANOSE
lig 44
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 47
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 50
MAN
O
4 11ALPHA-D-MANNOPYRANOSE
lig 51
MAN
O
5 11ALPHA-D-MANNOPYRANOSE
lig 52
MAN
O
6 11ALPHA-D-MANNOPYRANOSE
lig 53
MAN
O
7 11ALPHA-D-MANNOPYRANOSE
lig 54
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
MAN
P
3 11ALPHA-D-MANNOPYRANOSE
lig 57
MAN
P
4 11ALPHA-D-MANNOPYRANOSE
lig 58
MAN
P
5 11ALPHA-D-MANNOPYRANOSE
lig 59
MAN
P
6 11ALPHA-D-MANNOPYRANOSE
lig 60
MAN
P
7 11ALPHA-D-MANNOPYRANOSE
lig 61
NAG
A
911 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 62
NAG
A
912 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
NAG
A
919 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
NAG
A
920 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
TRS
A
921 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 66
NAG
B
911 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 67
NAG
B
912 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 68
NAG
B
915 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
NAG
B
916 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 70
TRS
B
917 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 71
NAG
C
911 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 72
NAG
C
912 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 73
NAG
C
918 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 74
NAG
C
919 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 75
TRS
C
920 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 76
NAG
D
911 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 77
NAG
D
912 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 78
NAG
D
920 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 79
NAG
D
921 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 80
TRS
D
922 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL