Analysis of Ligand-Protein Contacts in PDB entry:
6NMF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 60 ligands in PDB entry 6NMF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
1 9N-ACETYL-SERINE
lig 5
FME
N
1 10N-FORMYLMETHIONINE
lig 6
FME
O
1 10N-FORMYLMETHIONINE
lig 7
TPO
T
11 11PHOSPHOTHREONINE
lig 8
SAC
V
1 9N-ACETYL-SERINE
lig 9
HEA
A
601 60HEME-A
lig 10
HEA
A
602 60HEME-A
lig 11
CU
A
603 1COPPER (II) ION
lig 12
MG
A
604 1MAGNESIUM ION
lig 13
NA
A
605 1SODIUM ION
lig 14
PGV
A
606 51 OCTADEC-11-ENOATE
lig 15
PGV
A
607 51 OCTADEC-11-ENOATE
lig 16
TGL
A
608 63TRISTEAROYLGLYCEROL
lig 17
CDL
A
609 100CARDIOLIPIN
lig 18
TGL
B
301 63TRISTEAROYLGLYCEROL
lig 19
CUA
B
302 2DINUCLEAR COPPER ION
lig 20
CHD
B
303 29CHOLIC ACID
lig 21
PSC
B
304 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 22
DMU
C
301 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 23
PEK
C
302 53 11,14-TETRAENOATE
lig 24
PGV
C
303 51 OCTADEC-11-ENOATE
lig 25
CDL
C
304 100CARDIOLIPIN
lig 26
CHD
C
305 29CHOLIC ACID
lig 27
CHD
C
306 29CHOLIC ACID
lig 28
PGV
C
307 51 OCTADEC-11-ENOATE
lig 29
TGL
D
201 63TRISTEAROYLGLYCEROL
lig 30
ZN
F
101 1ZINC ION
lig 31
PEK
G
101 53 11,14-TETRAENOATE
lig 32
CDL
G
102 100CARDIOLIPIN
lig 33
PEK
G
103 53 11,14-TETRAENOATE
lig 34
CHD
G
104 29CHOLIC ACID
lig 35
CHD
J
101 29CHOLIC ACID
lig 36
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 37
HEA
N
601 60HEME-A
lig 38
HEA
N
602 60HEME-A
lig 39
CU
N
603 1COPPER (II) ION
lig 40
MG
N
604 1MAGNESIUM ION
lig 41
NA
N
605 1SODIUM ION
lig 42
PGV
N
606 51 OCTADEC-11-ENOATE
lig 43
TGL
N
607 63TRISTEAROYLGLYCEROL
lig 44
PSC
N
608 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 45
CUA
O
301 2DINUCLEAR COPPER ION
lig 46
PGV
P
301 51 OCTADEC-11-ENOATE
lig 47
PGV
P
302 51 OCTADEC-11-ENOATE
lig 48
DMU
P
303 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 49
PGV
P
304 51 OCTADEC-11-ENOATE
lig 50
CDL
P
305 100CARDIOLIPIN
lig 51
CHD
P
306 29CHOLIC ACID
lig 52
CHD
P
307 29CHOLIC ACID
lig 53
PEK
P
308 53 11,14-TETRAENOATE
lig 54
PEK
P
309 53 11,14-TETRAENOATE
lig 55
DMU
Q
201 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 56
ZN
S
101 1ZINC ION
lig 57
PEK
T
101 53 11,14-TETRAENOATE
lig 58
TGL
V
101 63TRISTEAROYLGLYCEROL
lig 59
CHD
W
101 29CHOLIC ACID
lig 60
TGL
Y
101 63TRISTEAROYLGLYCEROL