Analysis of Ligand-Protein Contacts in PDB entry:
6NYB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 8 ligands in PDB entry 6NYB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
365 10PHOSPHOSERINE
lig 2
SEP
A
729 10PHOSPHOSERINE
lig 3
AGS
A
801 31PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
lig 4
ZN
A
901 1ZINC ION
lig 5
ZN
A
902 1ZINC ION
lig 6
ADP
B
601 27ADENOSINE-5'-DIPHOSPHATE
lig 7
MG
B
602 1MAGNESIUM ION
lig 8
LCJ
B
901 25 IMIDAZO[1,5-A]PYRIDINE-6-CARBOXAMIDE