Analysis of Ligand-Protein Contacts in PDB entry:
6OFD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 87 ligands in PDB entry 6OFD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 3
NAG
E
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 7
FUC
F
4 10ALPHA-L-FUCOPYRANOSE
lig 8
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 11
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 13
FUC
G
6 10ALPHA-L-FUCOPYRANOSE
lig 14
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 17
FUC
H
4 10ALPHA-L-FUCOPYRANOSE
lig 18
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 21
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 24
FUC
J
4 10ALPHA-L-FUCOPYRANOSE
lig 25
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
FUC
K
2 10ALPHA-L-FUCOPYRANOSE
lig 27
NAG
K
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
FUC
L
2 10ALPHA-L-FUCOPYRANOSE
lig 30
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
FUC
M
2 10ALPHA-L-FUCOPYRANOSE
lig 32
NAG
M
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 36
FUC
N
4 10ALPHA-L-FUCOPYRANOSE
lig 37
ZN
A
501 1ZINC ION
lig 38
FE
A
502 1FE (III) ION
lig 39
NAG
A
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NA
A
518 1SODIUM ION
lig 41
NA
A
519 1SODIUM ION
lig 42
SO4
A
520 5SULFATE ION
lig 43
SO4
A
521 5SULFATE ION
lig 44
SO4
A
522 5SULFATE ION
lig 45
SO4
A
523 5SULFATE ION
lig 46
SO4
A
524 5SULFATE ION
lig 47
SO4
A
525 5SULFATE ION
lig 48
EDO
A
526 41,2-ETHANEDIOL
lig 49
PGE
A
527 7TRIETHYLENE GLYCOL
lig 50
ZN
B
501 1ZINC ION
lig 51
FE
B
502 1FE (III) ION
lig 52
NAG
B
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
SO4
B
515 5SULFATE ION
lig 54
SO4
B
516 5SULFATE ION
lig 55
SO4
B
517 5SULFATE ION
lig 56
SO4
B
518 5SULFATE ION
lig 57
SO4
B
519 5SULFATE ION
lig 58
SO4
B
520 5SULFATE ION
lig 59
SO4
B
521 5SULFATE ION
lig 60
SO4
B
522 5SULFATE ION
lig 61
EDO
B
523 41,2-ETHANEDIOL
lig 62
ZN
D
501 1ZINC ION
lig 63
FE
D
502 1FE (III) ION
lig 64
NAG
D
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
EDO
D
504 41,2-ETHANEDIOL
lig 66
NAG
D
510 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 67
NA
D
511 1SODIUM ION
lig 68
SO4
D
512 5SULFATE ION
lig 69
SO4
D
513 5SULFATE ION
lig 70
GOL
D
514 6GLYCEROL
lig 71
PGE
D
515 7TRIETHYLENE GLYCOL
lig 72
PGE
D
516 4TRIETHYLENE GLYCOL
lig 73
CL
D
517 1CHLORIDE ION
lig 74
ZN
C
501 1ZINC ION
lig 75
FE
C
502 1FE (III) ION
lig 76
NAG
C
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 77
NAG
C
507 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 78
NA
C
508 1SODIUM ION
lig 79
NA
C
509 1SODIUM ION
lig 80
SO4
C
514 5SULFATE ION
lig 81
SO4
C
515 5SULFATE ION
lig 82
SO4
C
516 5SULFATE ION
lig 83
EDO
C
517 41,2-ETHANEDIOL
lig 84
EDO
C
518 41,2-ETHANEDIOL
lig 85
EDO
C
519 41,2-ETHANEDIOL
lig 86
EDO
C
520 41,2-ETHANEDIOL
lig 87
NAG
C
521 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE