Analysis of Ligand-Protein Contacts in PDB entry:
6PD4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 6PD4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 7
NAG
E
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
FUC
E
4 10ALPHA-L-FUCOPYRANOSE
lig 9
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 16
BMA
H
4 11BETA-D-MANNOPYRANOSE
lig 17
FUC
H
5 10ALPHA-L-FUCOPYRANOSE
lig 18
FUC
H
6 10ALPHA-L-FUCOPYRANOSE
lig 19
NAG
A
705 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
SO4
A
710 5SULFATE ION
lig 21
SO4
A
711 5SULFATE ION
lig 22
SO4
A
712 5SULFATE ION
lig 23
SO4
A
713 5SULFATE ION
lig 24
SO4
A
714 5SULFATE ION
lig 25
SO4
A
715 5SULFATE ION
lig 26
SO4
A
716 5SULFATE ION
lig 27
NAG
B
705 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
SO4
B
712 5SULFATE ION
lig 29
SO4
B
713 5SULFATE ION
lig 30
SO4
B
714 5SULFATE ION
lig 31
SO4
B
715 5SULFATE ION
lig 32
SO4
B
716 5SULFATE ION
lig 33
SO4
B
717 5SULFATE ION