Analysis of Ligand-Protein Contacts in PDB entry:
6PTR


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 6PTR. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ACE
X
1 3ACETYL GROUP
lig 2
MVA
X
2 8N-METHYLVALINE
lig 3
MP8
X
3 8(4R)-4-METHYL-L-PROLINE
lig 4
NZC
X
4 8N-METHYLIDENE-L-THREONINE
lig 5
MP8
X
6 8(4R)-4-METHYL-L-PROLINE
lig 6
MVA
X
8 8N-METHYLVALINE
lig 7
MLU
X
10 9N-METHYL-D-LEUCINE
lig 8
ACE
Y
1 3ACETYL GROUP
lig 9
MVA
Y
2 8N-METHYLVALINE
lig 10
MP8
Y
3 8(4R)-4-METHYL-L-PROLINE
lig 11
NZC
Y
4 8N-METHYLIDENE-L-THREONINE
lig 12
MP8
Y
6 8(4R)-4-METHYL-L-PROLINE
lig 13
MVA
Y
8 8N-METHYLVALINE
lig 14
MLU
Y
10 9N-METHYL-D-LEUCINE
lig 15
EDO
A
501 41,2-ETHANEDIOL
lig 16
EDO
A
502 41,2-ETHANEDIOL
lig 17
EDO
A
503 41,2-ETHANEDIOL
lig 18
EDO
A
504 41,2-ETHANEDIOL
lig 19
EDO
A
505 41,2-ETHANEDIOL
lig 20
IOD
A
506 1IODIDE ION
lig 21
IOD
A
507 1IODIDE ION
lig 22
IOD
A
508 1IODIDE ION
lig 23
IOD
A
509 1IODIDE ION
lig 24
IOD
A
510 1IODIDE ION
lig 25
IOD
A
511 1IODIDE ION
lig 26
IOD
A
512 1IODIDE ION
lig 27
EDO
B
501 41,2-ETHANEDIOL
lig 28
IOD
B
502 1IODIDE ION
lig 29
IOD
B
503 1IODIDE ION
lig 30
IOD
B
504 1IODIDE ION
lig 31
IOD
B
505 1IODIDE ION