Analysis of Ligand-Protein Contacts in PDB entry:
6VEQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 34 ligands in PDB entry 6VEQ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CGU
A
4 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 2
CY3
A
20 72-AMINO-3-MERCAPTO-PROPIONAMIDE
lig 3
HYP
B
3 84-HYDROXYPROLINE
lig 4
CGU
B
10 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 5
HYP
H
3 84-HYDROXYPROLINE
lig 6
CGU
H
10 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 7
CGU
G
4 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 8
CY3
G
20 72-AMINO-3-MERCAPTO-PROPIONAMIDE
lig 9
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 12
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 13
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 16
FUC
N
4 10ALPHA-L-FUCOPYRANOSE
lig 17
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 20
MAN
O
4 11ALPHA-D-MANNOPYRANOSE
lig 21
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
BMA
P
3 11BETA-D-MANNOPYRANOSE
lig 24
FUC
P
4 10ALPHA-L-FUCOPYRANOSE
lig 25
NAG
E
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
E
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
E
507 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
SO4
E
512 5SULFATE ION
lig 29
SO4
E
513 5SULFATE ION
lig 30
SO4
D
201 5SULFATE ION
lig 31
NAG
K
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
K
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
K
507 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
SO4
K
512 5SULFATE ION