Analysis of Ligand-Protein Contacts in PDB entry:
6Y5Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 79 ligands in PDB entry 6Y5Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GLC
K
1 12ALPHA-D-GLUCOPYRANOSE
lig 2
GAL
K
2 11BETA-D-GALACTOPYRANOSE
lig 3
SIA
K
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
BGC
L
1 12BETA-D-GLUCOPYRANOSE
lig 5
GAL
L
2 11BETA-D-GALACTOPYRANOSE
lig 6
SIA
L
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 7
GLC
M
1 12ALPHA-D-GLUCOPYRANOSE
lig 8
GAL
M
2 11BETA-D-GALACTOPYRANOSE
lig 9
SIA
M
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 10
BGC
N
1 12BETA-D-GLUCOPYRANOSE
lig 11
GAL
N
2 11BETA-D-GALACTOPYRANOSE
lig 12
SIA
N
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 13
GLC
O
1 12ALPHA-D-GLUCOPYRANOSE
lig 14
GAL
O
2 11BETA-D-GALACTOPYRANOSE
lig 15
SIA
O
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 16
GLC
P
1 12ALPHA-D-GLUCOPYRANOSE
lig 17
GAL
P
2 11BETA-D-GALACTOPYRANOSE
lig 18
SIA
P
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 19
BGC
Q
1 12BETA-D-GLUCOPYRANOSE
lig 20
GAL
Q
2 11BETA-D-GALACTOPYRANOSE
lig 21
SIA
Q
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 22
BGC
R
1 12BETA-D-GLUCOPYRANOSE
lig 23
GAL
R
2 11BETA-D-GALACTOPYRANOSE
lig 24
SIA
R
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 25
BGC
S
1 12BETA-D-GLUCOPYRANOSE
lig 26
GAL
S
2 11BETA-D-GALACTOPYRANOSE
lig 27
SIA
S
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 28
BGC
T
1 12BETA-D-GLUCOPYRANOSE
lig 29
GAL
T
2 11BETA-D-GALACTOPYRANOSE
lig 30
SIA
T
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 31
GOL
A
404 6GLYCEROL
lig 32
GOL
A
405 6GLYCEROL
lig 33
GOL
A
406 6GLYCEROL
lig 34
GOL
A
407 6GLYCEROL
lig 35
GOL
A
408 6GLYCEROL
lig 36
MG
A
409 1MAGNESIUM ION
lig 37
MG
A
410 1MAGNESIUM ION
lig 38
GOL
B
404 6GLYCEROL
lig 39
GOL
B
405 6GLYCEROL
lig 40
GOL
B
406 6GLYCEROL
lig 41
GOL
B
407 6GLYCEROL
lig 42
GOL
B
408 6GLYCEROL
lig 43
MG
B
409 1MAGNESIUM ION
lig 44
GOL
C
404 6GLYCEROL
lig 45
GOL
C
405 6GLYCEROL
lig 46
GOL
C
406 6GLYCEROL
lig 47
GOL
C
407 6GLYCEROL
lig 48
MG
D
401 1MAGNESIUM ION
lig 49
GOL
D
405 6GLYCEROL
lig 50
GOL
D
406 6GLYCEROL
lig 51
GOL
D
407 6GLYCEROL
lig 52
MG
D
408 1MAGNESIUM ION
lig 53
GOL
E
404 6GLYCEROL
lig 54
GOL
E
405 6GLYCEROL
lig 55
GOL
E
406 6GLYCEROL
lig 56
GOL
E
407 6GLYCEROL
lig 57
GOL
F
404 6GLYCEROL
lig 58
GOL
F
405 6GLYCEROL
lig 59
GOL
F
406 6GLYCEROL
lig 60
MG
F
407 1MAGNESIUM ION
lig 61
MG
F
408 1MAGNESIUM ION
lig 62
GOL
G
404 6GLYCEROL
lig 63
GOL
G
405 6GLYCEROL
lig 64
GOL
G
406 6GLYCEROL
lig 65
GOL
G
407 6GLYCEROL
lig 66
GOL
G
408 6GLYCEROL
lig 67
MG
G
409 1MAGNESIUM ION
lig 68
GOL
H
404 6GLYCEROL
lig 69
GOL
H
405 6GLYCEROL
lig 70
GOL
H
406 6GLYCEROL
lig 71
MG
H
407 1MAGNESIUM ION
lig 72
GOL
I
404 6GLYCEROL
lig 73
GOL
I
405 6GLYCEROL
lig 74
GOL
I
406 6GLYCEROL
lig 75
MG
I
407 1MAGNESIUM ION
lig 76
GOL
J
404 6GLYCEROL
lig 77
GOL
J
405 6GLYCEROL
lig 78
GOL
J
406 6GLYCEROL
lig 79
GOL
J
407 6GLYCEROL