Analysis of Ligand-Protein Contacts in PDB entry:
6YBW


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 85 ligands in PDB entry 6YBW. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
A2M
A
27 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 2
OMU
A
116 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 3
PSU
A
119 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 4
OMU
A
121 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 5
A2M
A
159 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 6
A2M
A
166 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 7
OMC
A
174 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 8
A2M
A
484 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 9
OMG
A
509 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 10
OMC
A
517 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 11
PSU
A
612 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 12
OMG
A
644 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 13
A2M
A
668 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 14
OMG
A
683 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 15
5MU
A
814 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 16
PSU
A
822 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 17
PSU
A
823 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 18
A2M
A
1031 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 19
PSU
A
1081 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 20
OMC
A
1703 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 21
UR3
A
1830 213-METHYLURIDINE-5'-MONOPHOSHATE
lig 22
6MZ
A
1832 23N6-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 23
MA6
A
1850 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 24
MA6
A
1851 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 25
MG
L
301 1MAGNESIUM ION
lig 26
ZN
Q
201 1ZINC ION
lig 27
MG
S
301 1MAGNESIUM ION
lig 28
MG
A
1901 1MAGNESIUM ION
lig 29
MG
A
1902 1MAGNESIUM ION
lig 30
MG
A
1903 1MAGNESIUM ION
lig 31
MG
A
1904 1MAGNESIUM ION
lig 32
MG
A
1905 1MAGNESIUM ION
lig 33
MG
A
1906 1MAGNESIUM ION
lig 34
MG
A
1907 1MAGNESIUM ION
lig 35
MG
A
1908 1MAGNESIUM ION
lig 36
MG
A
1909 1MAGNESIUM ION
lig 37
MG
A
1910 1MAGNESIUM ION
lig 38
MG
A
1911 1MAGNESIUM ION
lig 39
MG
A
1912 1MAGNESIUM ION
lig 40
MG
A
1913 1MAGNESIUM ION
lig 41
MG
A
1914 1MAGNESIUM ION
lig 42
MG
A
1915 1MAGNESIUM ION
lig 43
MG
A
1916 1MAGNESIUM ION
lig 44
MG
A
1917 1MAGNESIUM ION
lig 45
MG
A
1918 1MAGNESIUM ION
lig 46
MG
A
1919 1MAGNESIUM ION
lig 47
MG
A
1920 1MAGNESIUM ION
lig 48
MG
A
1921 1MAGNESIUM ION
lig 49
MG
A
1922 1MAGNESIUM ION
lig 50
MG
A
1923 1MAGNESIUM ION
lig 51
MG
A
1924 1MAGNESIUM ION
lig 52
MG
A
1925 1MAGNESIUM ION
lig 53
MG
A
1926 1MAGNESIUM ION
lig 54
MG
A
1927 1MAGNESIUM ION
lig 55
MG
A
1928 1MAGNESIUM ION
lig 56
MG
A
1929 1MAGNESIUM ION
lig 57
MG
A
1930 1MAGNESIUM ION
lig 58
MG
A
1931 1MAGNESIUM ION
lig 59
MG
A
1932 1MAGNESIUM ION
lig 60
MG
A
1933 1MAGNESIUM ION
lig 61
MG
A
1934 1MAGNESIUM ION
lig 62
MG
A
1935 1MAGNESIUM ION
lig 63
MG
A
1936 1MAGNESIUM ION
lig 64
MG
A
1937 1MAGNESIUM ION
lig 65
MG
A
1938 1MAGNESIUM ION
lig 66
MG
A
1939 1MAGNESIUM ION
lig 67
MG
A
1940 1MAGNESIUM ION
lig 68
MG
A
1941 1MAGNESIUM ION
lig 69
MG
A
1942 1MAGNESIUM ION
lig 70
MG
A
1943 1MAGNESIUM ION
lig 71
MG
A
1944 1MAGNESIUM ION
lig 72
MG
A
1945 1MAGNESIUM ION
lig 73
MG
A
1946 1MAGNESIUM ION
lig 74
MG
A
1947 1MAGNESIUM ION
lig 75
MG
A
1948 1MAGNESIUM ION
lig 76
MG
A
1949 1MAGNESIUM ION
lig 77
MG
A
1950 1MAGNESIUM ION
lig 78
MG
A
1951 1MAGNESIUM ION
lig 79
MG
A
1952 1MAGNESIUM ION
lig 80
MG
A
1953 1MAGNESIUM ION
lig 81
MG
A
1954 1MAGNESIUM ION
lig 82
MG
A
1955 1MAGNESIUM ION
lig 83
MG
A
1956 1MAGNESIUM ION
lig 84
MG
A
1957 1MAGNESIUM ION
lig 85
MG
A
1958 1MAGNESIUM ION