Analysis of Ligand-Protein Contacts in PDB entry:
6YC0


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 75 ligands in PDB entry 6YC0. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OLC
A
301 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 2
OLC
A
302 17(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 3
OLC
A
303 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 4
OLC
A
304 13(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 5
OLC
A
305 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 6
LFA
A
306 7EICOSANE
lig 7
LFA
A
307 8EICOSANE
lig 8
LFA
A
308 8EICOSANE
lig 9
LFA
A
309 4EICOSANE
lig 10
LFA
A
310 6EICOSANE
lig 11
LFA
A
311 7EICOSANE
lig 12
NA
A
312 1SODIUM ION
lig 13
OLC
A
313 19(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 14
OLC
A
314 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 15
RET
A
315 20RETINAL
lig 16
OLC
A
316 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 17
GOL
A
317 4GLYCEROL
lig 18
NA
A
318 1SODIUM ION
lig 19
OLC
B
301 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 20
OLC
B
302 5(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 21
OLC
B
303 12(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 22
LFA
B
304 8EICOSANE
lig 23
LFA
B
305 10EICOSANE
lig 24
LFA
B
306 7EICOSANE
lig 25
NA
B
307 1SODIUM ION
lig 26
RET
B
308 20RETINAL
lig 27
OLA
B
309 17OLEIC ACID
lig 28
OLA
B
310 18OLEIC ACID
lig 29
GOL
B
311 4GLYCEROL
lig 30
NA
B
312 1SODIUM ION
lig 31
OLC
C
301 21(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 32
OLC
C
302 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 33
OLC
C
303 19(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 34
OLC
C
304 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 35
OLC
C
305 12(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 36
OLC
C
306 17(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 37
OLC
C
307 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 38
LFA
C
308 4EICOSANE
lig 39
LFA
C
309 8EICOSANE
lig 40
LFA
C
310 20EICOSANE
lig 41
NA
C
311 1SODIUM ION
lig 42
OLA
C
312 18OLEIC ACID
lig 43
GOL
C
313 4GLYCEROL
lig 44
RET
C
314 20RETINAL
lig 45
OLC
C
315 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 46
NA
C
316 1SODIUM ION
lig 47
OLC
D
301 5(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 48
OLC
D
302 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 49
OLC
D
303 5(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 50
OLC
D
304 14(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 51
LFA
D
305 20EICOSANE
lig 52
LFA
D
306 20EICOSANE
lig 53
LFA
D
307 8EICOSANE
lig 54
LFA
D
308 17EICOSANE
lig 55
LFA
D
309 7EICOSANE
lig 56
NA
D
310 1SODIUM ION
lig 57
RET
D
311 20RETINAL
lig 58
OLC
D
312 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 59
OLA
D
313 7OLEIC ACID
lig 60
NA
D
314 1SODIUM ION
lig 61
OLA
E
401 20OLEIC ACID
lig 62
OLA
E
402 17OLEIC ACID
lig 63
OLA
E
403 15OLEIC ACID
lig 64
OLC
E
404 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 65
OLC
E
405 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 66
OLC
E
406 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 67
OLC
E
407 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 68
LFA
E
408 8EICOSANE
lig 69
LFA
E
409 14EICOSANE
lig 70
LFA
E
410 4EICOSANE
lig 71
LFA
E
411 5EICOSANE
lig 72
NA
E
412 1SODIUM ION
lig 73
OLA
E
413 6OLEIC ACID
lig 74
RET
E
414 20RETINAL
lig 75
NA
E
415 1SODIUM ION