Analysis of Ligand-Protein Contacts in PDB entry:
6YC3


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 96 ligands in PDB entry 6YC3. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OLC
A
301 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 2
OLC
A
302 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 3
OLC
A
303 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 4
OLC
A
304 13(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 5
OLC
A
305 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 6
OLC
A
306 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 7
OLC
A
307 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 8
OLC
A
308 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 9
LFA
A
309 7EICOSANE
lig 10
LFA
A
310 8EICOSANE
lig 11
LFA
A
311 8EICOSANE
lig 12
LFA
A
312 4EICOSANE
lig 13
LFA
A
313 6EICOSANE
lig 14
LFA
A
314 16EICOSANE
lig 15
BOG
A
315 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 16
OLC
A
316 19(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 17
OLC
A
317 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 18
LFA
A
318 20EICOSANE
lig 19
LFA
A
319 9EICOSANE
lig 20
RET
A
320 20RETINAL
lig 21
NA
A
321 1SODIUM ION
lig 22
NA
A
322 1SODIUM ION
lig 23
OLC
B
301 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 24
LFA
B
302 20EICOSANE
lig 25
OLC
B
303 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 26
OLC
B
304 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 27
OLC
B
305 21(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 28
OLC
B
306 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 29
OLC
B
307 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 30
LFA
B
308 9EICOSANE
lig 31
LFA
B
309 8EICOSANE
lig 32
LFA
B
310 10EICOSANE
lig 33
LFA
B
311 7EICOSANE
lig 34
BOG
B
312 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 35
RET
B
313 20RETINAL
lig 36
LFA
B
314 4EICOSANE
lig 37
NA
B
315 1SODIUM ION
lig 38
NA
B
316 1SODIUM ION
lig 39
OLC
C
301 21(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 40
OLC
C
302 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 41
OLC
C
303 12(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 42
LFA
C
304 20EICOSANE
lig 43
OLC
C
305 23(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 44
OLC
C
306 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 45
OLC
C
307 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 46
OLC
C
308 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 47
OLC
C
309 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 48
OLC
C
310 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 49
LFA
C
311 7EICOSANE
lig 50
LFA
C
312 8EICOSANE
lig 51
LFA
C
313 20EICOSANE
lig 52
LFA
C
314 6EICOSANE
lig 53
LFA
C
315 4EICOSANE
lig 54
BOG
C
316 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 55
RET
C
317 20RETINAL
lig 56
OLC
C
318 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 57
NA
C
319 1SODIUM ION
lig 58
NA
C
320 1SODIUM ION
lig 59
LFA
D
301 20EICOSANE
lig 60
OLC
D
302 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 61
OLC
D
303 13(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 62
OLC
D
304 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 63
OLC
D
305 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 64
OLC
D
306 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 65
OLC
D
307 14(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 66
OLC
D
308 7(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 67
OLC
D
309 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 68
LFA
D
310 20EICOSANE
lig 69
LFA
D
311 20EICOSANE
lig 70
LFA
D
312 8EICOSANE
lig 71
LFA
D
313 17EICOSANE
lig 72
LFA
D
314 7EICOSANE
lig 73
LFA
D
315 6EICOSANE
lig 74
BOG
D
316 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 75
RET
D
317 20RETINAL
lig 76
NA
D
318 1SODIUM ION
lig 77
NA
D
319 1SODIUM ION
lig 78
LFA
E
301 14EICOSANE
lig 79
OLC
E
302 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 80
LFA
E
303 20EICOSANE
lig 81
OLC
E
304 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 82
OLC
E
305 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 83
OLC
E
306 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 84
OLC
E
307 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 85
OLC
E
308 15(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 86
OLC
E
309 6(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 87
OLC
E
310 22(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 88
OLC
E
311 20(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 89
LFA
E
312 8EICOSANE
lig 90
LFA
E
313 14EICOSANE
lig 91
LFA
E
314 4EICOSANE
lig 92
LFA
E
315 5EICOSANE
lig 93
BOG
E
316 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 94
RET
E
317 20RETINAL
lig 95
NA
E
318 1SODIUM ION
lig 96
NA
E
319 1SODIUM ION