Analysis of Ligand-Protein Contacts in PDB entry:
6YMX


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 6YMX. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CU
a
601 1COPPER (II) ION
lig 2
HEA
a
602 60HEME-A
lig 3
HEA
a
603 60HEME-A
lig 4
PTY
a
604 34PHOSPHATIDYLETHANOLAMINE
lig 5
CN3
a
605 55 PENTAOXA-5,11-DIPHOSPHANONADEC-1-YL UNDEC
lig 6
CUA
b
301 2DINUCLEAR COPPER ION
lig 7
PTY
b
302 35PHOSPHATIDYLETHANOLAMINE
lig 8
PTY
c
301 40PHOSPHATIDYLETHANOLAMINE
lig 9
PCF
c
302 431,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 10
ZN
d
201 1ZINC ION
lig 11
PCF
e
201 361,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 12
PTY
i
101 40PHOSPHATIDYLETHANOLAMINE
lig 13
PTY
m
101 41PHOSPHATIDYLETHANOLAMINE
lig 14
PTY
m
102 30PHOSPHATIDYLETHANOLAMINE
lig 15
PCF
m
103 381,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 16
6PH
C
401 40 PENTADECANOATE
lig 17
HEM
C
402 43PROTOPORPHYRIN IX CONTAINING FE
lig 18
HEM
C
403 43PROTOPORPHYRIN IX CONTAINING FE
lig 19
8PE
C
404 47 (TETRADECANOYLOXY)PROPYL OCTADECANOATE
lig 20
CN5
C
405 41 PENTADECANOATE
lig 21
UQ6
C
406 43 22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZE
lig 22
9PE
C
407 40 [(HEPTANOYLOXY)METHYL]ETHYL OCTADECANOATE
lig 23
HEM
D
401 43PROTOPORPHYRIN IX CONTAINING FE
lig 24
PTY
D
402 32PHOSPHATIDYLETHANOLAMINE
lig 25
7PH
E
301 38 TETRADECANOATE
lig 26
FES
E
302 4FE2/S2 (INORGANIC) CLUSTER
lig 27
PCF
I
101 351,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 28
HEM
N
401 43PROTOPORPHYRIN IX CONTAINING FE
lig 29
HEM
N
402 43PROTOPORPHYRIN IX CONTAINING FE
lig 30
UQ6
N
403 43 22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZE
lig 31
8PE
N
404 47 (TETRADECANOYLOXY)PROPYL OCTADECANOATE
lig 32
9PE
N
405 40 [(HEPTANOYLOXY)METHYL]ETHYL OCTADECANOATE
lig 33
CN3
N
406 55 PENTAOXA-5,11-DIPHOSPHANONADEC-1-YL UNDEC
lig 34
6PH
O
401 40 PENTADECANOATE
lig 35
HEM
O
402 43PROTOPORPHYRIN IX CONTAINING FE
lig 36
7PH
O
403 38 TETRADECANOATE
lig 37
FES
P
301 4FE2/S2 (INORGANIC) CLUSTER
lig 38
PCF
T
101 351,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE