Analysis of Ligand-Protein Contacts in PDB entry:
6YP7


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 325 ligands in PDB entry 6YP7. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CHL
g
601 66CHLOROPHYLL B
lig 2
CLA
g
602 65CHLOROPHYLL A
lig 3
CLA
g
603 65CHLOROPHYLL A
lig 4
CLA
g
604 50CHLOROPHYLL A
lig 5
CHL
g
605 46CHLOROPHYLL B
lig 6
CHL
g
606 50CHLOROPHYLL B
lig 7
CHL
g
607 66CHLOROPHYLL B
lig 8
CHL
g
608 66CHLOROPHYLL B
lig 9
CHL
g
609 61CHLOROPHYLL B
lig 10
CLA
g
610 64CHLOROPHYLL A
lig 11
CLA
g
611 60CHLOROPHYLL A
lig 12
CLA
g
612 60CHLOROPHYLL A
lig 13
CLA
g
613 65CHLOROPHYLL A
lig 14
CLA
g
614 48CHLOROPHYLL A
lig 15
LUT
g
615 42 CAROTENE-3,3'-DIOL
lig 16
LUT
g
616 42 CAROTENE-3,3'-DIOL
lig 17
XAT
g
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 18
NEX
g
618 44 DIOL
lig 19
LHG
g
619 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 20
CHL
n
601 66CHLOROPHYLL B
lig 21
CLA
n
602 65CHLOROPHYLL A
lig 22
CLA
n
603 65CHLOROPHYLL A
lig 23
CLA
n
604 50CHLOROPHYLL A
lig 24
CHL
n
605 50CHLOROPHYLL B
lig 25
CHL
n
606 66CHLOROPHYLL B
lig 26
CHL
n
607 66CHLOROPHYLL B
lig 27
CHL
n
608 66CHLOROPHYLL B
lig 28
CLA
n
609 65CHLOROPHYLL A
lig 29
CLA
n
610 60CHLOROPHYLL A
lig 30
CLA
n
611 60CHLOROPHYLL A
lig 31
CLA
n
612 60CHLOROPHYLL A
lig 32
CLA
n
613 48CHLOROPHYLL A
lig 33
LUT
n
614 42 CAROTENE-3,3'-DIOL
lig 34
XAT
n
615 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 35
NEX
n
616 44 DIOL
lig 36
LHG
n
617 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 37
CHL
y
601 66CHLOROPHYLL B
lig 38
CLA
y
602 65CHLOROPHYLL A
lig 39
CLA
y
603 65CHLOROPHYLL A
lig 40
CLA
y
604 50CHLOROPHYLL A
lig 41
CHL
y
605 48CHLOROPHYLL B
lig 42
CHL
y
606 50CHLOROPHYLL B
lig 43
CHL
y
607 66CHLOROPHYLL B
lig 44
CHL
y
608 66CHLOROPHYLL B
lig 45
CHL
y
609 66CHLOROPHYLL B
lig 46
CLA
y
610 60CHLOROPHYLL A
lig 47
CLA
y
611 60CHLOROPHYLL A
lig 48
CLA
y
612 65CHLOROPHYLL A
lig 49
CLA
y
613 48CHLOROPHYLL A
lig 50
LUT
y
614 42 CAROTENE-3,3'-DIOL
lig 51
XAT
y
615 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 52
NEX
y
616 44 DIOL
lig 53
LHG
y
617 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 54
NEX
y
618 44 DIOL
lig 55
CHL
G
601 66CHLOROPHYLL B
lig 56
CLA
G
602 65CHLOROPHYLL A
lig 57
CLA
G
603 65CHLOROPHYLL A
lig 58
CLA
G
604 50CHLOROPHYLL A
lig 59
CHL
G
605 46CHLOROPHYLL B
lig 60
CHL
G
606 50CHLOROPHYLL B
lig 61
CHL
G
607 66CHLOROPHYLL B
lig 62
CHL
G
608 66CHLOROPHYLL B
lig 63
CHL
G
609 61CHLOROPHYLL B
lig 64
CLA
G
610 64CHLOROPHYLL A
lig 65
CLA
G
611 60CHLOROPHYLL A
lig 66
CLA
G
612 60CHLOROPHYLL A
lig 67
CLA
G
613 65CHLOROPHYLL A
lig 68
CLA
G
614 48CHLOROPHYLL A
lig 69
LUT
G
615 42 CAROTENE-3,3'-DIOL
lig 70
LUT
G
616 42 CAROTENE-3,3'-DIOL
lig 71
XAT
G
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 72
LHG
G
618 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 73
CHL
N
601 66CHLOROPHYLL B
lig 74
CLA
N
602 65CHLOROPHYLL A
lig 75
CLA
N
603 65CHLOROPHYLL A
lig 76
CLA
N
604 50CHLOROPHYLL A
lig 77
CHL
N
605 50CHLOROPHYLL B
lig 78
CHL
N
606 66CHLOROPHYLL B
lig 79
CHL
N
607 66CHLOROPHYLL B
lig 80
CHL
N
608 66CHLOROPHYLL B
lig 81
CLA
N
609 65CHLOROPHYLL A
lig 82
CLA
N
610 60CHLOROPHYLL A
lig 83
CLA
N
611 60CHLOROPHYLL A
lig 84
CLA
N
612 60CHLOROPHYLL A
lig 85
CLA
N
613 48CHLOROPHYLL A
lig 86
LUT
N
614 42 CAROTENE-3,3'-DIOL
lig 87
LUT
N
615 42 CAROTENE-3,3'-DIOL
lig 88
XAT
N
616 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 89
NEX
N
617 44 DIOL
lig 90
LHG
N
618 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 91
CHL
Y
601 66CHLOROPHYLL B
lig 92
CLA
Y
602 65CHLOROPHYLL A
lig 93
CLA
Y
603 65CHLOROPHYLL A
lig 94
CLA
Y
604 50CHLOROPHYLL A
lig 95
CHL
Y
605 50CHLOROPHYLL B
lig 96
CHL
Y
606 66CHLOROPHYLL B
lig 97
CHL
Y
607 66CHLOROPHYLL B
lig 98
CHL
Y
608 66CHLOROPHYLL B
lig 99
CLA
Y
609 60CHLOROPHYLL A
lig 100
CLA
Y
610 60CHLOROPHYLL A
lig 101
CLA
Y
611 65CHLOROPHYLL A
lig 102
CLA
Y
612 48CHLOROPHYLL A
lig 103
LUT
Y
613 42 CAROTENE-3,3'-DIOL
lig 104
LUT
Y
614 42 CAROTENE-3,3'-DIOL
lig 105
XAT
Y
615 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 106
NEX
Y
616 44 DIOL
lig 107
LHG
Y
617 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 108
OEX
a
401 10CA-MN4-O5 CLUSTER
lig 109
FE2
a
402 1FE (II) ION
lig 110
CL
a
403 1CHLORIDE ION
lig 111
CLA
a
404 65CHLOROPHYLL A
lig 112
CLA
a
405 65CHLOROPHYLL A
lig 113
CLA
a
406 50CHLOROPHYLL A
lig 114
PHO
a
407 64PHEOPHYTIN A
lig 115
CLA
a
408 60CHLOROPHYLL A
lig 116
BCR
a
409 40BETA-CAROTENE
lig 117
PL9
a
410 13 BENZOQUINONE
lig 118
SQD
a
411 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 119
BCT
a
412 4BICARBONATE ION
lig 120
DGD
a
413 59DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 121
CLA
b
601 65CHLOROPHYLL A
lig 122
CLA
b
602 65CHLOROPHYLL A
lig 123
CLA
b
603 65CHLOROPHYLL A
lig 124
CLA
b
604 65CHLOROPHYLL A
lig 125
CLA
b
605 65CHLOROPHYLL A
lig 126
CLA
b
606 65CHLOROPHYLL A
lig 127
CLA
b
607 65CHLOROPHYLL A
lig 128
CLA
b
608 65CHLOROPHYLL A
lig 129
CLA
b
609 65CHLOROPHYLL A
lig 130
CLA
b
610 65CHLOROPHYLL A
lig 131
CLA
b
611 65CHLOROPHYLL A
lig 132
CLA
b
612 65CHLOROPHYLL A
lig 133
CLA
b
613 65CHLOROPHYLL A
lig 134
CLA
b
614 65CHLOROPHYLL A
lig 135
CLA
b
615 65CHLOROPHYLL A
lig 136
BCR
b
616 40BETA-CAROTENE
lig 137
BCR
b
617 40BETA-CAROTENE
lig 138
BCR
b
618 40BETA-CAROTENE
lig 139
LHG
b
619 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 140
LMG
b
620 551,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 141
CL
c
501 1CHLORIDE ION
lig 142
CLA
c
502 65CHLOROPHYLL A
lig 143
CLA
c
503 65CHLOROPHYLL A
lig 144
CLA
c
504 65CHLOROPHYLL A
lig 145
CLA
c
505 65CHLOROPHYLL A
lig 146
CLA
c
506 65CHLOROPHYLL A
lig 147
CLA
c
507 65CHLOROPHYLL A
lig 148
CLA
c
508 65CHLOROPHYLL A
lig 149
CLA
c
509 65CHLOROPHYLL A
lig 150
CLA
c
510 65CHLOROPHYLL A
lig 151
CLA
c
511 65CHLOROPHYLL A
lig 152
CLA
c
512 65CHLOROPHYLL A
lig 153
CLA
c
513 65CHLOROPHYLL A
lig 154
CLA
c
514 65CHLOROPHYLL A
lig 155
BCR
c
515 40BETA-CAROTENE
lig 156
BCR
c
516 40BETA-CAROTENE
lig 157
DGD
c
517 55DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 158
DGD
c
518 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 159
DGD
c
519 60DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 160
LHG
c
520 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 161
LHG
c
521 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 162
LHG
c
522 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 163
LMG
c
523 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 164
PHO
d
401 64PHEOPHYTIN A
lig 165
SQD
d
402 50 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 166
CLA
d
403 65CHLOROPHYLL A
lig 167
CLA
d
404 65CHLOROPHYLL A
lig 168
BCR
d
405 40BETA-CAROTENE
lig 169
PL9
d
406 55 BENZOQUINONE
lig 170
LHG
d
407 461,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 171
LHG
d
408 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 172
LHG
d
409 431,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 173
LMG
d
410 461,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 174
HEM
f
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 175
BCR
h
101 40BETA-CAROTENE
lig 176
DGD
h
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 177
BCR
k
101 40BETA-CAROTENE
lig 178
BCR
k
102 40BETA-CAROTENE
lig 179
LMG
k
103 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 180
SQD
l
101 42 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 181
LHG
l
102 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 182
SQD
l
103 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 183
CLA
w
101 60CHLOROPHYLL A
lig 184
LMG
w
102 481,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 185
CLA
x
101 65CHLOROPHYLL A
lig 186
DGD
A
401 59DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 187
OEX
A
402 10CA-MN4-O5 CLUSTER
lig 188
FE2
A
403 1FE (II) ION
lig 189
CL
A
404 1CHLORIDE ION
lig 190
CLA
A
405 65CHLOROPHYLL A
lig 191
CLA
A
406 65CHLOROPHYLL A
lig 192
CLA
A
407 50CHLOROPHYLL A
lig 193
PHO
A
408 64PHEOPHYTIN A
lig 194
CLA
A
409 60CHLOROPHYLL A
lig 195
BCR
A
410 40BETA-CAROTENE
lig 196
PL9
A
411 13 BENZOQUINONE
lig 197
SQD
A
412 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 198
LMG
B
601 401,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 199
BCR
B
602 40BETA-CAROTENE
lig 200
CLA
B
603 65CHLOROPHYLL A
lig 201
CLA
B
604 65CHLOROPHYLL A
lig 202
CLA
B
605 65CHLOROPHYLL A
lig 203
CLA
B
606 65CHLOROPHYLL A
lig 204
CLA
B
607 65CHLOROPHYLL A
lig 205
CLA
B
608 65CHLOROPHYLL A
lig 206
CLA
B
609 65CHLOROPHYLL A
lig 207
CLA
B
610 65CHLOROPHYLL A
lig 208
CLA
B
611 65CHLOROPHYLL A
lig 209
CLA
B
612 65CHLOROPHYLL A
lig 210
CLA
B
613 65CHLOROPHYLL A
lig 211
CLA
B
614 65CHLOROPHYLL A
lig 212
CLA
B
615 65CHLOROPHYLL A
lig 213
CLA
B
616 65CHLOROPHYLL A
lig 214
CLA
B
617 65CHLOROPHYLL A
lig 215
CLA
B
618 65CHLOROPHYLL A
lig 216
BCR
B
619 40BETA-CAROTENE
lig 217
BCR
B
620 40BETA-CAROTENE
lig 218
BCR
B
621 40BETA-CAROTENE
lig 219
LHG
B
622 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 220
LMG
B
623 551,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 221
CL
C
501 1CHLORIDE ION
lig 222
LMG
C
502 481,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 223
CLA
C
503 65CHLOROPHYLL A
lig 224
CLA
C
504 65CHLOROPHYLL A
lig 225
CLA
C
505 65CHLOROPHYLL A
lig 226
CLA
C
506 65CHLOROPHYLL A
lig 227
CLA
C
507 65CHLOROPHYLL A
lig 228
CLA
C
508 65CHLOROPHYLL A
lig 229
CLA
C
509 65CHLOROPHYLL A
lig 230
CLA
C
510 65CHLOROPHYLL A
lig 231
CLA
C
511 65CHLOROPHYLL A
lig 232
CLA
C
512 65CHLOROPHYLL A
lig 233
CLA
C
513 65CHLOROPHYLL A
lig 234
CLA
C
514 65CHLOROPHYLL A
lig 235
CLA
C
515 65CHLOROPHYLL A
lig 236
BCR
C
516 40BETA-CAROTENE
lig 237
BCR
C
517 40BETA-CAROTENE
lig 238
DGD
C
518 55DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 239
DGD
C
519 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 240
LHG
C
520 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 241
LHG
C
521 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 242
LHG
C
522 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 243
LMG
C
523 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 244
PHO
D
401 64PHEOPHYTIN A
lig 245
SQD
D
402 50 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 246
BCT
D
403 4BICARBONATE ION
lig 247
CLA
D
404 65CHLOROPHYLL A
lig 248
CLA
D
405 65CHLOROPHYLL A
lig 249
BCR
D
406 40BETA-CAROTENE
lig 250
PL9
D
407 55 BENZOQUINONE
lig 251
LHG
D
408 461,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 252
LHG
D
409 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 253
LHG
D
410 431,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 254
LMG
D
411 461,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 255
HEM
F
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 256
BCR
H
101 40BETA-CAROTENE
lig 257
DGD
H
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 258
LMG
I
101 401,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 259
DGD
J
101 60DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 260
BCR
K
101 40BETA-CAROTENE
lig 261
BCR
K
102 40BETA-CAROTENE
lig 262
LMG
K
103 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 263
SQD
L
101 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 264
SQD
L
102 42 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 265
LHG
L
103 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 266
LMG
M
101 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 267
LMG
T
101 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 268
BCR
T
102 40BETA-CAROTENE
lig 269
CLA
W
101 60CHLOROPHYLL A
lig 270
CHL
r
301 48CHLOROPHYLL B
lig 271
LHG
r
302 471,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 272
CLA
r
303 60CHLOROPHYLL A
lig 273
CLA
r
304 60CHLOROPHYLL A
lig 274
CLA
r
305 48CHLOROPHYLL A
lig 275
CHL
r
306 66CHLOROPHYLL B
lig 276
CHL
r
307 56CHLOROPHYLL B
lig 277
CHL
r
308 61CHLOROPHYLL B
lig 278
CLA
r
309 58CHLOROPHYLL A
lig 279
CLA
r
310 65CHLOROPHYLL A
lig 280
CLA
r
311 49CHLOROPHYLL A
lig 281
CLA
r
312 60CHLOROPHYLL A
lig 282
LUT
r
313 42 CAROTENE-3,3'-DIOL
lig 283
XAT
r
314 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 284
NEX
r
315 44 DIOL
lig 285
CHL
s
301 48CHLOROPHYLL B
lig 286
CHL
s
302 46CHLOROPHYLL B
lig 287
CLA
s
303 61CHLOROPHYLL A
lig 288
CLA
s
304 45CHLOROPHYLL A
lig 289
CLA
s
305 50CHLOROPHYLL A
lig 290
CHL
s
306 46CHLOROPHYLL B
lig 291
CHL
s
307 46CHLOROPHYLL B
lig 292
CLA
s
308 45CHLOROPHYLL A
lig 293
CLA
s
309 55CHLOROPHYLL A
lig 294
CLA
s
310 55CHLOROPHYLL A
lig 295
CLA
s
311 56CHLOROPHYLL A
lig 296
CLA
s
312 49CHLOROPHYLL A
lig 297
CLA
s
313 55CHLOROPHYLL A
lig 298
LHG
s
314 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 299
CHL
S
301 48CHLOROPHYLL B
lig 300
CHL
S
302 46CHLOROPHYLL B
lig 301
CLA
S
303 61CHLOROPHYLL A
lig 302
CLA
S
304 45CHLOROPHYLL A
lig 303
CLA
S
305 50CHLOROPHYLL A
lig 304
CHL
S
306 46CHLOROPHYLL B
lig 305
CHL
S
307 46CHLOROPHYLL B
lig 306
CLA
S
308 45CHLOROPHYLL A
lig 307
CLA
S
309 55CHLOROPHYLL A
lig 308
CLA
S
310 55CHLOROPHYLL A
lig 309
CLA
S
311 56CHLOROPHYLL A
lig 310
CLA
S
312 49CHLOROPHYLL A
lig 311
CLA
S
313 55CHLOROPHYLL A
lig 312
LHG
S
314 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 313
LHG
R
301 471,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 314
CLA
R
302 60CHLOROPHYLL A
lig 315
CLA
R
303 60CHLOROPHYLL A
lig 316
CLA
R
304 48CHLOROPHYLL A
lig 317
CHL
R
305 66CHLOROPHYLL B
lig 318
CHL
R
306 56CHLOROPHYLL B
lig 319
CHL
R
307 61CHLOROPHYLL B
lig 320
CLA
R
308 58CHLOROPHYLL A
lig 321
CLA
R
309 65CHLOROPHYLL A
lig 322
CLA
R
310 49CHLOROPHYLL A
lig 323
CLA
R
311 60CHLOROPHYLL A
lig 324
LUT
R
312 42 CAROTENE-3,3'-DIOL
lig 325
XAT
R
313 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL