Analysis of Ligand-Protein Contacts in PDB entry:
6ZKV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 42 ligands in PDB entry 6ZKV. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
4
85 13N3, N4-DIMETHYLARGININE
lig 2
FME
K
1 10N-FORMYLMETHIONINE
lig 3
FME
L
1 10N-FORMYLMETHIONINE
lig 4
FME
M
1 10N-FORMYLMETHIONINE
lig 5
AYA
h
1 8N-ACETYLALANINE
lig 6
SEP
k
36 10PHOSPHOSERINE
lig 7
SF4
1
500 8IRON/SULFUR CLUSTER
lig 8
FMN
1
501 31FLAVIN MONONUCLEOTIDE
lig 9
FES
2
300 4FE2/S2 (INORGANIC) CLUSTER
lig 10
SF4
3
801 8IRON/SULFUR CLUSTER
lig 11
SF4
3
802 8IRON/SULFUR CLUSTER
lig 12
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 13
K
3
804 1POTASSIUM ION
lig 14
SF4
6
201 8IRON/SULFUR CLUSTER
lig 15
PC1
6
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 16
3PE
6
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
9
401 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
SF4
9
402 8IRON/SULFUR CLUSTER
lig 19
SF4
9
403 8IRON/SULFUR CLUSTER
lig 20
PC1
A
201 371,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21
3PE
A
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 22
3PE
H
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
3PE
L
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
PC1
L
1002 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
CDL
L
1003 100CARDIOLIPIN
lig 26
3PE
L
1004 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
PC1
M
501 361,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
CDL
M
502 90CARDIOLIPIN
lig 29
3PE
N
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
3PE
N
402 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 31
CDL
N
403 75CARDIOLIPIN
lig 32
CDL
W
201 100CARDIOLIPIN
lig 33
ZMP
X
101 31 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 34
CDL
Y
201 100CARDIOLIPIN
lig 35
ZN
b
300 1ZINC ION
lig 36
NDP
d
401 48 PHOSPHATE
lig 37
ZMP
g
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 38
CDL
h
201 58CARDIOLIPIN
lig 39
3PE
i
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
AMP
k
501 23ADENOSINE MONOPHOSPHATE
lig 41
MYR
s
201 15MYRISTIC ACID
lig 42
PC1
w
801 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE