Analysis of Ligand-Protein Contacts in PDB entry:
6DMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 6DMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GTP
A
1 32GUANOSINE-5'-TRIPHOSPHATE
lig 2
CCC
A
102 23CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHA
lig 3
GTP
B
1 32GUANOSINE-5'-TRIPHOSPHATE
lig 4
CCC
B
102 23CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHA
lig 5
G4P
A
201 36GUANOSINE-5',3'-TETRAPHOSPHATE
lig 6
MN
A
202 1MANGANESE (II) ION
lig 7
MN
A
203 1MANGANESE (II) ION
lig 8
MN
A
204 1MANGANESE (II) ION
lig 9
MN
A
205 1MANGANESE (II) ION
lig 10
MN
A
206 1MANGANESE (II) ION
lig 11
MN
A
207 1MANGANESE (II) ION
lig 12
NA
A
208 1SODIUM ION
lig 13
NA
A
209 1SODIUM ION
lig 14
NA
A
210 1SODIUM ION
lig 15
NA
A
211 1SODIUM ION
lig 16
NA
A
212 1SODIUM ION
lig 17
MG
A
213 1MAGNESIUM ION
lig 18
MG
A
214 1MAGNESIUM ION
lig 19
MG
A
215 1MAGNESIUM ION
lig 20
MG
A
216 1MAGNESIUM ION
lig 21
MG
A
217 1MAGNESIUM ION
lig 22
MG
A
218 1MAGNESIUM ION
lig 23
K
A
219 1POTASSIUM ION
lig 24
G4P
B
201 36GUANOSINE-5',3'-TETRAPHOSPHATE
lig 25
MN
B
202 1MANGANESE (II) ION
lig 26
MN
B
203 1MANGANESE (II) ION
lig 27
MN
B
204 1MANGANESE (II) ION
lig 28
MN
B
205 1MANGANESE (II) ION
lig 29
NA
B
206 1SODIUM ION
lig 30
NA
B
207 1SODIUM ION
lig 31
NA
B
208 1SODIUM ION
lig 32
MG
B
209 1MAGNESIUM ION
lig 33
MG
B
210 1MAGNESIUM ION