Analysis of Ligand-Protein Contacts in PDB entry:
6DWD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 56 ligands in PDB entry 6DWD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HDV
D
701 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 2
GTP
D
702 32GUANOSINE-5'-TRIPHOSPHATE
lig 3
HDV
D
703 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 4
GTP
D
704 32GUANOSINE-5'-TRIPHOSPHATE
lig 5
MG
D
705 1MAGNESIUM ION
lig 6
MG
D
706 1MAGNESIUM ION
lig 7
NA
D
707 1SODIUM ION
lig 8
NA
D
708 1SODIUM ION
lig 9
NA
D
709 1SODIUM ION
lig 10
NA
D
710 1SODIUM ION
lig 11
NA
D
711 1SODIUM ION
lig 12
NA
D
712 1SODIUM ION
lig 13
GLY
D
713 5GLYCINE
lig 14
SIN
D
714 8SUCCINIC ACID
lig 15
HDV
C
701 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 16
GTP
C
702 32GUANOSINE-5'-TRIPHOSPHATE
lig 17
MG
C
703 1MAGNESIUM ION
lig 18
HDV
C
704 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 19
MG
C
705 1MAGNESIUM ION
lig 20
MG
C
706 1MAGNESIUM ION
lig 21
MG
C
707 1MAGNESIUM ION
lig 22
NA
C
708 1SODIUM ION
lig 23
NA
C
709 1SODIUM ION
lig 24
NA
C
710 1SODIUM ION
lig 25
NA
C
711 1SODIUM ION
lig 26
GLY
C
712 5GLYCINE
lig 27
GLY
C
713 5GLYCINE
lig 28
PO4
C
714 5PHOSPHATE ION
lig 29
HDV
B
701 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 30
HDV
B
702 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 31
GTP
B
703 32GUANOSINE-5'-TRIPHOSPHATE
lig 32
MG
B
704 1MAGNESIUM ION
lig 33
NA
B
705 1SODIUM ION
lig 34
NA
B
706 1SODIUM ION
lig 35
NA
B
707 1SODIUM ION
lig 36
NA
B
708 1SODIUM ION
lig 37
GLY
B
709 5GLYCINE
lig 38
SIN
B
710 8SUCCINIC ACID
lig 39
MG
A
701 1MAGNESIUM ION
lig 40
HDV
A
702 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 41
MG
A
703 1MAGNESIUM ION
lig 42
HDV
A
704 32 D-ARABINOFURANOSYL}-2-ME THYL-9H-PURIN-6-
lig 43
MG
A
705 1MAGNESIUM ION
lig 44
NA
A
706 1SODIUM ION
lig 45
NA
A
707 1SODIUM ION
lig 46
NA
A
708 1SODIUM ION
lig 47
NA
A
709 1SODIUM ION
lig 48
NA
A
710 1SODIUM ION
lig 49
NA
A
711 1SODIUM ION
lig 50
NA
A
712 1SODIUM ION
lig 51
NA
A
713 1SODIUM ION
lig 52
NA
A
714 1SODIUM ION
lig 53
GLY
A
715 5GLYCINE
lig 54
GLY
A
716 5GLYCINE
lig 55
GLY
A
717 5GLYCINE
lig 56
TCE
A
718 163,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID