Analysis of Ligand-Protein Contacts in PDB entry:
6F39


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 21 ligands in PDB entry 6F39. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
GAL
C
5 11BETA-D-GALACTOPYRANOSE
lig 6
MAN
C
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 10
MAN
D
4 11ALPHA-D-MANNOPYRANOSE
lig 11
GAL
D
5 11BETA-D-GALACTOPYRANOSE
lig 12
MAN
D
6 11ALPHA-D-MANNOPYRANOSE
lig 13
CA
A
301 1CALCIUM ION
lig 14
CA
A
302 1CALCIUM ION
lig 15
CA
A
303 1CALCIUM ION
lig 16
NA
A
304 1SODIUM ION
lig 17
NAG
A
305 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
CA
B
301 1CALCIUM ION
lig 19
CA
B
302 1CALCIUM ION
lig 20
CA
B
303 1CALCIUM ION
lig 21
NA
B
304 1SODIUM ION