Analysis of Ligand-Protein Contacts in PDB entry:
6JD1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 60 ligands in PDB entry 6JD1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MG
A
401 1MAGNESIUM ION
lig 2
MG
A
402 1MAGNESIUM ION
lig 3
MG
A
403 1MAGNESIUM ION
lig 4
NAI
A
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 5
9TY
A
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 6
MG
B
401 1MAGNESIUM ION
lig 7
MG
B
402 1MAGNESIUM ION
lig 8
MG
B
403 1MAGNESIUM ION
lig 9
NAI
B
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 10
9TY
B
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 11
MG
C
401 1MAGNESIUM ION
lig 12
MG
C
402 1MAGNESIUM ION
lig 13
MG
C
403 1MAGNESIUM ION
lig 14
NAI
C
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 15
9TY
C
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 16
MG
D
401 1MAGNESIUM ION
lig 17
MG
D
402 1MAGNESIUM ION
lig 18
MG
D
403 1MAGNESIUM ION
lig 19
NAI
D
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 20
9TY
D
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 21
MG
E
401 1MAGNESIUM ION
lig 22
MG
E
402 1MAGNESIUM ION
lig 23
NAI
E
403 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 24
9TY
E
404 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 25
MG
F
401 1MAGNESIUM ION
lig 26
MG
F
402 1MAGNESIUM ION
lig 27
MG
F
403 1MAGNESIUM ION
lig 28
MG
F
404 1MAGNESIUM ION
lig 29
NAI
F
405 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 30
9TY
F
406 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 31
MG
G
401 1MAGNESIUM ION
lig 32
MG
G
402 1MAGNESIUM ION
lig 33
MG
G
403 1MAGNESIUM ION
lig 34
NAI
G
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 35
9TY
G
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 36
MG
H
401 1MAGNESIUM ION
lig 37
MG
H
402 1MAGNESIUM ION
lig 38
MG
H
403 1MAGNESIUM ION
lig 39
NAI
H
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 40
9TY
H
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 41
MG
I
401 1MAGNESIUM ION
lig 42
MG
I
402 1MAGNESIUM ION
lig 43
MG
I
403 1MAGNESIUM ION
lig 44
NAI
I
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 45
9TY
I
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 46
MG
J
401 1MAGNESIUM ION
lig 47
MG
J
402 1MAGNESIUM ION
lig 48
MG
J
403 1MAGNESIUM ION
lig 49
NAI
J
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 50
9TY
J
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 51
MG
K
401 1MAGNESIUM ION
lig 52
MG
K
402 1MAGNESIUM ION
lig 53
MG
K
403 1MAGNESIUM ION
lig 54
NAI
K
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 55
9TY
K
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID
lig 56
MG
L
401 1MAGNESIUM ION
lig 57
MG
L
402 1MAGNESIUM ION
lig 58
MG
L
403 1MAGNESIUM ION
lig 59
NAI
L
404 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 60
9TY
L
405 9CYCLOPROPANE-1,1-DICARBOXYLIC ACID