Analysis of Ligand-Protein Contacts in PDB entry:
6JPA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 41 ligands in PDB entry 6JPA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 8
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 11
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
L
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
A
1901 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
CA
A
1902 1CALCIUM ION
lig 20
CA
A
1903 1CALCIUM ION
lig 21
3PE
A
1904 331,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 22
3PE
A
1905 191,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
3PE
A
1906 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
3PE
A
1907 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
3PE
A
1908 201,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 26
PC1
A
1909 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 27
PC1
A
1910 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
3PE
A
1911 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
3PE
A
1912 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
3PE
A
1913 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 31
9Z9
A
1914 30 (METHOXYMETHYL)BUTOXY]SPIROST-5-EN
lig 32
4YH
A
1915 33 PENTANENITRILE
lig 33
CA
A
1917 1CALCIUM ION
lig 34
ETA
F
1101 4ETHANOLAMINE
lig 35
NAG
F
1104 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
F
1107 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
F
1114 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
F
1115 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
F
1120 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
F
1121 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
F
1122 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE