Analysis of Ligand-Protein Contacts in PDB entry:
6M1Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 26 ligands in PDB entry 6M1Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
940 11PHOSPHOTHREONINE
lig 2
TPO
A
997 11PHOSPHOTHREONINE
lig 3
TPO
B
940 11PHOSPHOTHREONINE
lig 4
TPO
B
997 11PHOSPHOTHREONINE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
K
A
1101 1POTASSIUM ION
lig 18
CL
A
1102 1CHLORIDE ION
lig 19
CL
A
1103 1CHLORIDE ION
lig 20
NAG
A
1110 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
A
1111 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
K
B
1101 1POTASSIUM ION
lig 23
CL
B
1102 1CHLORIDE ION
lig 24
CL
B
1103 1CHLORIDE ION
lig 25
NAG
B
1110 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
B
1111 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE