Analysis of Ligand-Protein Contacts in PDB entry:
6MDS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 6MDS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
BMA
C
2 11BETA-D-MANNOPYRANOSE
lig 3
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
C
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
GAL
C
5 11BETA-D-GALACTOPYRANOSE
lig 6
MAN
C
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
C
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
GAL
C
8 11BETA-D-GALACTOPYRANOSE
lig 9
NAG
D
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
D
2 11BETA-D-MANNOPYRANOSE
lig 11
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
D
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
GAL
D
5 11BETA-D-GALACTOPYRANOSE
lig 14
MAN
D
6 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
D
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
GAL
D
8 11BETA-D-GALACTOPYRANOSE
lig 17
CA
A
909 1CALCIUM ION
lig 18
CA
B
901 1CALCIUM ION