Analysis of Ligand-Protein Contacts in PDB entry:
6MKB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 6MKB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 8
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 11
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
H
5 11ALPHA-D-MANNOPYRANOSE
lig 17
NA
A
401 1SODIUM ION
lig 18
NA
A
402 1SODIUM ION
lig 19
SO4
B
401 5SULFATE ION
lig 20
SO4
B
402 5SULFATE ION
lig 21
SO4
B
403 5SULFATE ION
lig 22
SO4
B
404 5SULFATE ION
lig 23
NA
B
408 1SODIUM ION
lig 24
SO4
C
401 5SULFATE ION
lig 25
SO4
C
402 5SULFATE ION
lig 26
SO4
C
403 4SULFATE ION
lig 27
NA
C
404 1SODIUM ION
lig 28
NA
C
405 1SODIUM ION
lig 29
SO4
D
401 5SULFATE ION
lig 30
NA
D
402 1SODIUM ION