Analysis of Ligand-Protein Contacts in PDB entry:
6NKN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 64 ligands in PDB entry 6NKN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
1 9N-ACETYL-SERINE
lig 5
FME
N
1 10N-FORMYLMETHIONINE
lig 6
FME
O
1 10N-FORMYLMETHIONINE
lig 7
TPO
T
11 11PHOSPHOTHREONINE
lig 8
SAC
V
1 9N-ACETYL-SERINE
lig 9
CU
A
601 1COPPER (II) ION
lig 10
MG
A
602 1MAGNESIUM ION
lig 11
NA
A
603 1SODIUM ION
lig 12
HEA
A
604 60HEME-A
lig 13
HEA
A
605 60HEME-A
lig 14
PGV
A
606 51 OCTADEC-11-ENOATE
lig 15
PGV
A
607 51 OCTADEC-11-ENOATE
lig 16
PGV
A
608 51 OCTADEC-11-ENOATE
lig 17
TGL
A
609 63TRISTEAROYLGLYCEROL
lig 18
O
A
610 1OXYGEN ATOM
lig 19
OH
A
611 1HYDROXIDE ION
lig 20
CUA
B
301 2DINUCLEAR COPPER ION
lig 21
PSC
B
302 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 22
TGL
B
303 63TRISTEAROYLGLYCEROL
lig 23
CHD
B
304 29CHOLIC ACID
lig 24
CHD
C
301 29CHOLIC ACID
lig 25
PEK
C
302 53 11,14-TETRAENOATE
lig 26
PGV
C
303 51 OCTADEC-11-ENOATE
lig 27
CDL
C
304 100CARDIOLIPIN
lig 28
ZN
F
101 1ZINC ION
lig 29
DMU
G
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 30
PEK
G
102 53 11,14-TETRAENOATE
lig 31
PEK
G
103 53 11,14-TETRAENOATE
lig 32
CHD
G
104 29CHOLIC ACID
lig 33
CHD
J
101 29CHOLIC ACID
lig 34
CHD
J
102 29CHOLIC ACID
lig 35
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 36
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 37
CDL
N
601 100CARDIOLIPIN
lig 38
CU
N
602 1COPPER (II) ION
lig 39
MG
N
603 1MAGNESIUM ION
lig 40
NA
N
604 1SODIUM ION
lig 41
HEA
N
605 60HEME-A
lig 42
HEA
N
606 60HEME-A
lig 43
TGL
N
607 63TRISTEAROYLGLYCEROL
lig 44
PGV
N
608 51 OCTADEC-11-ENOATE
lig 45
TGL
N
609 63TRISTEAROYLGLYCEROL
lig 46
PGV
N
610 51 OCTADEC-11-ENOATE
lig 47
O
N
611 1OXYGEN ATOM
lig 48
OH
N
612 1HYDROXIDE ION
lig 49
CUA
O
301 2DINUCLEAR COPPER ION
lig 50
PSC
O
302 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 51
CHD
P
301 29CHOLIC ACID
lig 52
PEK
P
302 53 11,14-TETRAENOATE
lig 53
PEK
P
303 53 11,14-TETRAENOATE
lig 54
PGV
P
304 51 OCTADEC-11-ENOATE
lig 55
CDL
P
305 100CARDIOLIPIN
lig 56
DMU
Q
201 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 57
ZN
S
101 1ZINC ION
lig 58
DMU
T
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 59
PEK
T
102 53 11,14-TETRAENOATE
lig 60
CDL
T
103 100CARDIOLIPIN
lig 61
PGV
U
101 51 OCTADEC-11-ENOATE
lig 62
CHD
W
101 29CHOLIC ACID
lig 63
CHD
W
102 29CHOLIC ACID
lig 64
TGL
Y
101 63TRISTEAROYLGLYCEROL