Analysis of Ligand-Protein Contacts in PDB entry:
6NMP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 62 ligands in PDB entry 6NMP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
1 9N-ACETYL-SERINE
lig 5
FME
N
1 10N-FORMYLMETHIONINE
lig 6
FME
O
1 10N-FORMYLMETHIONINE
lig 7
TPO
T
11 11PHOSPHOTHREONINE
lig 8
SAC
V
1 9N-ACETYL-SERINE
lig 9
CU
A
601 1COPPER (II) ION
lig 10
MG
A
602 1MAGNESIUM ION
lig 11
NA
A
603 1SODIUM ION
lig 12
HEA
A
604 60HEME-A
lig 13
HEA
A
605 60HEME-A
lig 14
PGV
A
606 51 OCTADEC-11-ENOATE
lig 15
PGV
A
607 51 OCTADEC-11-ENOATE
lig 16
TGL
A
608 63TRISTEAROYLGLYCEROL
lig 17
PER
A
609 2PEROXIDE ION
lig 18
CUA
B
301 2DINUCLEAR COPPER ION
lig 19
PSC
B
302 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 20
CHD
B
303 29CHOLIC ACID
lig 21
PGV
C
301 51 OCTADEC-11-ENOATE
lig 22
DMU
C
302 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 23
CHD
C
303 29CHOLIC ACID
lig 24
PEK
C
304 53 11,14-TETRAENOATE
lig 25
PGV
C
305 51 OCTADEC-11-ENOATE
lig 26
CDL
C
306 100CARDIOLIPIN
lig 27
CHD
C
307 29CHOLIC ACID
lig 28
PEK
C
308 53 11,14-TETRAENOATE
lig 29
ZN
F
101 1ZINC ION
lig 30
PEK
G
101 53 11,14-TETRAENOATE
lig 31
CDL
G
102 100CARDIOLIPIN
lig 32
PEK
G
103 53 11,14-TETRAENOATE
lig 33
TGL
I
101 63TRISTEAROYLGLYCEROL
lig 34
CHD
J
101 29CHOLIC ACID
lig 35
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 36
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 37
CU
N
601 1COPPER (II) ION
lig 38
MG
N
602 1MAGNESIUM ION
lig 39
NA
N
603 1SODIUM ION
lig 40
HEA
N
604 60HEME-A
lig 41
HEA
N
605 60HEME-A
lig 42
PGV
N
606 51 OCTADEC-11-ENOATE
lig 43
PER
N
607 2PEROXIDE ION
lig 44
CUA
O
301 2DINUCLEAR COPPER ION
lig 45
CHD
O
302 29CHOLIC ACID
lig 46
PSC
O
303 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 47
TGL
O
304 63TRISTEAROYLGLYCEROL
lig 48
PGV
P
301 51 OCTADEC-11-ENOATE
lig 49
CHD
P
302 29CHOLIC ACID
lig 50
PEK
P
303 53 11,14-TETRAENOATE
lig 51
PGV
P
304 51 OCTADEC-11-ENOATE
lig 52
PGV
P
305 51 OCTADEC-11-ENOATE
lig 53
CDL
P
306 100CARDIOLIPIN
lig 54
CHD
P
307 29CHOLIC ACID
lig 55
DMU
Q
201 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 56
ZN
S
101 1ZINC ION
lig 57
DMU
T
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 58
PEK
T
102 53 11,14-TETRAENOATE
lig 59
CDL
T
103 100CARDIOLIPIN
lig 60
TGL
V
101 63TRISTEAROYLGLYCEROL
lig 61
CHD
W
101 29CHOLIC ACID
lig 62
TGL
Y
101 63TRISTEAROYLGLYCEROL