Analysis of Ligand-Protein Contacts in PDB entry:
6PD2

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 59 ligands in PDB entry 6PD2. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	PLP	A	701	16	PYRIDOXAL-5'-PHOSPHATE
lig 2	MG	A	702	1	MAGNESIUM ION
lig 3	MG	A	703	1	MAGNESIUM ION
lig 4	PO4	A	704	5	PHOSPHATE ION
lig 5	0RC	A	705	27	PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]CYTIDI
lig 6	EDO	A	706	4	1,2-ETHANEDIOL
lig 7	ACT	A	707	4	ACETATE ION
lig 8	EDO	A	708	4	1,2-ETHANEDIOL
lig 9	EDO	A	709	4	1,2-ETHANEDIOL
lig 10	EDO	A	710	4	1,2-ETHANEDIOL
lig 11	EDO	A	711	4	1,2-ETHANEDIOL
lig 12	EDO	A	712	4	1,2-ETHANEDIOL
lig 13	EDO	A	713	4	1,2-ETHANEDIOL
lig 14	EDO	A	714	4	1,2-ETHANEDIOL
lig 15	ACT	A	715	4	ACETATE ION
lig 16	EDO	A	716	4	1,2-ETHANEDIOL
lig 17	EDO	A	717	4	1,2-ETHANEDIOL
lig 18	PO4	A	718	5	PHOSPHATE ION
lig 19	PLP	B	701	16	PYRIDOXAL-5'-PHOSPHATE
lig 20	MG	B	702	1	MAGNESIUM ION
lig 21	MG	B	703	1	MAGNESIUM ION
lig 22	PO4	B	704	5	PHOSPHATE ION
lig 23	0RC	B	705	27	PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]CYTIDI
lig 24	EDO	B	706	4	1,2-ETHANEDIOL
lig 25	EDO	B	707	4	1,2-ETHANEDIOL
lig 26	PO4	B	708	5	PHOSPHATE ION
lig 27	GOL	B	709	6	GLYCEROL
lig 28	EDO	B	710	4	1,2-ETHANEDIOL
lig 29	GOL	B	711	6	GLYCEROL
lig 30	PO4	B	712	5	PHOSPHATE ION
lig 31	ACT	C	2201	4	ACETATE ION
lig 32	PLP	C	2202	16	PYRIDOXAL-5'-PHOSPHATE
lig 33	MG	C	2203	1	MAGNESIUM ION
lig 34	PO4	C	2204	5	PHOSPHATE ION
lig 35	0RC	C	2205	27	PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]CYTIDI
lig 36	EDO	C	2206	4	1,2-ETHANEDIOL
lig 37	PO4	C	2207	5	PHOSPHATE ION
lig 38	EDO	C	2208	4	1,2-ETHANEDIOL
lig 39	EDO	C	2209	4	1,2-ETHANEDIOL
lig 40	EDO	C	2210	4	1,2-ETHANEDIOL
lig 41	MG	C	2211	1	MAGNESIUM ION
lig 42	EDO	C	2212	4	1,2-ETHANEDIOL
lig 43	EDO	C	2213	4	1,2-ETHANEDIOL
lig 44	EDO	C	2214	4	1,2-ETHANEDIOL
lig 45	PO4	C	2215	5	PHOSPHATE ION
lig 46	MG	D	701	1	MAGNESIUM ION
lig 47	PLP	D	702	16	PYRIDOXAL-5'-PHOSPHATE
lig 48	MG	D	703	1	MAGNESIUM ION
lig 49	PO4	D	704	5	PHOSPHATE ION
lig 50	0RC	D	705	27	PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]CYTIDI
lig 51	EDO	D	706	4	1,2-ETHANEDIOL
lig 52	EDO	D	707	4	1,2-ETHANEDIOL
lig 53	EDO	D	708	4	1,2-ETHANEDIOL
lig 54	PO4	D	709	5	PHOSPHATE ION
lig 55	EDO	D	710	4	1,2-ETHANEDIOL
lig 56	EDO	D	711	4	1,2-ETHANEDIOL
lig 57	EDO	D	712	4	1,2-ETHANEDIOL
lig 58	EDO	D	713	4	1,2-ETHANEDIOL
lig 59	PO4	D	714	5	PHOSPHATE ION

Analysis of Ligand-Protein Contacts in PDB entry: 6PD2

Analysis of Ligand-Protein Contacts in PDB entry:
6PD2