Analysis of Ligand-Protein Contacts in PDB entry:
6PMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 58 ligands in PDB entry 6PMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SHV
H
1 8HEPTANOIC ACID
lig 2
WFP
H
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 3
YCP
H
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 4
MP8
H
7 8(4R)-4-METHYL-L-PROLINE
lig 5
SHV
J
1 8HEPTANOIC ACID
lig 6
WFP
J
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 7
YCP
J
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 8
MP8
J
7 8(4R)-4-METHYL-L-PROLINE
lig 9
SHV
O
1 8HEPTANOIC ACID
lig 10
WFP
O
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 11
YCP
O
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 12
MP8
O
7 8(4R)-4-METHYL-L-PROLINE
lig 13
SHV
P
1 8HEPTANOIC ACID
lig 14
WFP
P
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 15
YCP
P
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 16
MP8
P
7 8(4R)-4-METHYL-L-PROLINE
lig 17
SHV
Q
1 8HEPTANOIC ACID
lig 18
WFP
Q
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 19
YCP
Q
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 20
MP8
Q
7 8(4R)-4-METHYL-L-PROLINE
lig 21
SHV
R
1 8HEPTANOIC ACID
lig 22
WFP
R
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 23
YCP
R
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 24
MP8
R
7 8(4R)-4-METHYL-L-PROLINE
lig 25
SHV
U
1 8HEPTANOIC ACID
lig 26
WFP
U
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 27
YCP
U
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 28
MP8
U
7 8(4R)-4-METHYL-L-PROLINE
lig 29
SHV
V
1 8HEPTANOIC ACID
lig 30
WFP
V
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 31
YCP
V
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 32
MP8
V
7 8(4R)-4-METHYL-L-PROLINE
lig 33
SHV
X
1 8HEPTANOIC ACID
lig 34
WFP
X
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 35
YCP
X
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 36
MP8
X
7 8(4R)-4-METHYL-L-PROLINE
lig 37
SHV
Y
1 8HEPTANOIC ACID
lig 38
WFP
Y
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 39
YCP
Y
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 40
MP8
Y
7 8(4R)-4-METHYL-L-PROLINE
lig 41
SHV
Z
1 8HEPTANOIC ACID
lig 42
WFP
Z
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 43
YCP
Z
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 44
MP8
Z
7 8(4R)-4-METHYL-L-PROLINE
lig 45
MPD
A
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 46
MPD
B
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 47
MPD
C
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 48
MPD
D
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 49
MPD
E
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 50
MPD
F
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 51
MPD
G
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 52
MPD
I
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 53
MPD
K
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 54
MPD
L
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 55
MPD
M
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 56
MPD
N
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 57
MPD
S
400 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 58
MPD
T
400 8(4S)-2-METHYL-2,4-PENTANEDIOL