Analysis of Ligand-Protein Contacts in PDB entry:
6PV8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 57 ligands in PDB entry 6PV8. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
K
5 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 11
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 14
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
M
5 11ALPHA-D-MANNOPYRANOSE
lig 16
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 19
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 22
MAN
O
4 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
O
5 11ALPHA-D-MANNOPYRANOSE
lig 24
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
BMA
Q
3 11BETA-D-MANNOPYRANOSE
lig 29
MAN
Q
4 11ALPHA-D-MANNOPYRANOSE
lig 30
MAN
Q
5 11ALPHA-D-MANNOPYRANOSE
lig 31
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
BMA
R
3 11BETA-D-MANNOPYRANOSE
lig 34
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
BMA
S
3 11BETA-D-MANNOPYRANOSE
lig 37
MAN
S
4 11ALPHA-D-MANNOPYRANOSE
lig 38
MAN
S
5 11ALPHA-D-MANNOPYRANOSE
lig 39
P1M
A
701 18 AZABICYCLO[3.3.1]NONAN-3-AMINE
lig 40
Y01
A
709 28CHOLESTEROL HEMISUCCINATE
lig 41
Y01
A
710 28CHOLESTEROL HEMISUCCINATE
lig 42
NAG
B
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
B
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
Y01
B
711 28CHOLESTEROL HEMISUCCINATE
lig 45
Y01
B
712 28CHOLESTEROL HEMISUCCINATE
lig 46
NA
B
713 1SODIUM ION
lig 47
NAG
C
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
C
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
Y01
C
711 28CHOLESTEROL HEMISUCCINATE
lig 50
Y01
C
712 28CHOLESTEROL HEMISUCCINATE
lig 51
P1M
D
701 18 AZABICYCLO[3.3.1]NONAN-3-AMINE
lig 52
Y01
D
709 28CHOLESTEROL HEMISUCCINATE
lig 53
Y01
D
710 28CHOLESTEROL HEMISUCCINATE
lig 54
NAG
E
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
NAG
E
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
Y01
E
711 28CHOLESTEROL HEMISUCCINATE
lig 57
Y01
E
712 28CHOLESTEROL HEMISUCCINATE