Analysis of Ligand-Protein Contacts in PDB entry:
6TVD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 39 ligands in PDB entry 6TVD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
M
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
GAL
M
2 11BETA-D-GALACTOPYRANOSE
lig 3
SIA
M
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
NAG
N
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
GAL
N
2 11BETA-D-GALACTOPYRANOSE
lig 6
SIA
N
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 7
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
P
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
P
2 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
P
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
R
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
GAL
R
2 11BETA-D-GALACTOPYRANOSE
lig 16
SIA
R
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 17
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
GAL
T
1 12BETA-D-GALACTOPYRANOSE
lig 20
SIA
T
2 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 21
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
V
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
GAL
V
2 11BETA-D-GALACTOPYRANOSE
lig 25
SIA
V
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 26
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
A
404 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
CA
A
405 1CALCIUM ION
lig 30
NAG
B
201 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
C
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
E
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
F
203 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
G
404 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
CA
H
203 1CALCIUM ION
lig 36
NAG
I
403 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
K
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
CA
K
405 1CALCIUM ION
lig 39
NAG
L
203 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE