Analysis of Ligand-Protein Contacts in PDB entry:
6VD1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 6VD1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PPK
A
401 13(DIPHOSPHONO)AMINOPHOSPHONIC ACID
lig 2
MG
A
402 1MAGNESIUM ION
lig 3
MG
A
403 1MAGNESIUM ION
lig 4
MG
A
404 1MAGNESIUM ION
lig 5
K
A
405 1POTASSIUM ION
lig 6
MPO
A
406 133[N-MORPHOLINO]PROPANE SULFONIC ACID
lig 7
1PE
A
407 16PENTAETHYLENE GLYCOL
lig 8
PGE
A
408 10TRIETHYLENE GLYCOL
lig 9
SAM
A
409 27S-ADENOSYLMETHIONINE
lig 10
EDO
A
410 41,2-ETHANEDIOL
lig 11
PPK
B
401 13(DIPHOSPHONO)AMINOPHOSPHONIC ACID
lig 12
PDO
B
402 51,3-PROPANDIOL
lig 13
PGR
B
403 5R-1,2-PROPANEDIOL
lig 14
MG
B
404 1MAGNESIUM ION
lig 15
PE8
B
405 253,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-D
lig 16
K
B
406 1POTASSIUM ION
lig 17
MPO
B
407 133[N-MORPHOLINO]PROPANE SULFONIC ACID
lig 18
PGE
B
408 10TRIETHYLENE GLYCOL
lig 19
SAM
B
409 27S-ADENOSYLMETHIONINE
lig 20
EDO
B
410 41,2-ETHANEDIOL