Analysis of Ligand-Protein Contacts in PDB entry:
6VD2


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 6VD2. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SAM
A
401 27S-ADENOSYLMETHIONINE
lig 2
MG
A
402 1MAGNESIUM ION
lig 3
MG
A
403 1MAGNESIUM ION
lig 4
K
A
404 1POTASSIUM ION
lig 5
PO4
A
405 5PHOSPHATE ION
lig 6
PO4
A
406 5PHOSPHATE ION
lig 7
MG
A
407 1MAGNESIUM ION
lig 8
PGE
A
408 10TRIETHYLENE GLYCOL
lig 9
MPO
A
409 133[N-MORPHOLINO]PROPANE SULFONIC ACID
lig 10
PEG
A
410 7DI(HYDROXYETHYL)ETHER
lig 11
PE8
A
411 253,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-D
lig 12
SAM
B
401 27S-ADENOSYLMETHIONINE
lig 13
MG
B
402 1MAGNESIUM ION
lig 14
K
B
403 1POTASSIUM ION
lig 15
PO4
B
404 5PHOSPHATE ION
lig 16
PO4
B
405 5PHOSPHATE ION
lig 17
PO4
B
406 5PHOSPHATE ION
lig 18
MPO
B
407 133[N-MORPHOLINO]PROPANE SULFONIC ACID
lig 19
PEG
B
408 7DI(HYDROXYETHYL)ETHER