Analysis of Ligand-Protein Contacts in PDB entry:
6VFD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 6VFD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
EDO
A
301 41,2-ETHANEDIOL
lig 2
EDO
A
302 41,2-ETHANEDIOL
lig 3
SER
A
303 7SERINE
lig 4
DMS
A
304 4DIMETHYL SULFOXIDE
lig 5
CL
A
305 1CHLORIDE ION
lig 6
CL
A
306 1CHLORIDE ION
lig 7
1D0
B
401 29 HYDROXYPHENYL)AMINO]PROPANOIC ACID
lig 8
SER
B
402 7SERINE
lig 9
EDO
B
403 41,2-ETHANEDIOL
lig 10
EDO
B
404 41,2-ETHANEDIOL
lig 11
DMS
B
405 4DIMETHYL SULFOXIDE
lig 12
DMS
B
406 4DIMETHYL SULFOXIDE
lig 13
DMS
B
407 4DIMETHYL SULFOXIDE
lig 14
DMS
B
408 4DIMETHYL SULFOXIDE
lig 15
DMS
B
409 4DIMETHYL SULFOXIDE
lig 16
DMS
B
410 4DIMETHYL SULFOXIDE
lig 17
DMS
B
411 4DIMETHYL SULFOXIDE
lig 18
DMS
B
412 4DIMETHYL SULFOXIDE
lig 19
DMS
B
413 4DIMETHYL SULFOXIDE
lig 20
CS
B
414 1CESIUM ION
lig 21
CS
B
415 1CESIUM ION
lig 22
CS
B
416 1CESIUM ION
lig 23
CL
B
417 1CHLORIDE ION
lig 24
CL
B
418 1CHLORIDE ION
lig 25
CL
B
419 1CHLORIDE ION
lig 26
CL
B
420 1CHLORIDE ION
lig 27
CL
B
421 1CHLORIDE ION
lig 28
CL
B
422 1CHLORIDE ION
lig 29
CL
B
423 1CHLORIDE ION
lig 30
CL
B
424 1CHLORIDE ION
lig 31
CL
B
425 1CHLORIDE ION
lig 32
CL
B
426 1CHLORIDE ION
lig 33
CL
B
427 1CHLORIDE ION
lig 34
CL
B
428 1CHLORIDE ION
lig 35
CL
B
429 1CHLORIDE ION
lig 36
CL
B
430 1CHLORIDE ION