Analysis of Ligand-Protein Contacts in PDB entry:
6VFR


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 45 ligands in PDB entry 6VFR. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
FUC
C
4 10ALPHA-L-FUCOPYRANOSE
lig 5
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUC
D
2 10ALPHA-L-FUCOPYRANOSE
lig 7
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 10
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 15
FUC
F
6 10ALPHA-L-FUCOPYRANOSE
lig 16
CA
A
510 1CALCIUM ION
lig 17
CA
A
511 1CALCIUM ION
lig 18
CA
A
512 1CALCIUM ION
lig 19
CA
A
513 1CALCIUM ION
lig 20
CA
A
514 1CALCIUM ION
lig 21
CA
A
515 1CALCIUM ION
lig 22
CA
A
516 1CALCIUM ION
lig 23
CA
A
517 1CALCIUM ION
lig 24
CA
A
518 1CALCIUM ION
lig 25
EDO
A
519 41,2-ETHANEDIOL
lig 26
EDO
A
520 41,2-ETHANEDIOL
lig 27
EDO
A
521 41,2-ETHANEDIOL
lig 28
EDO
A
522 41,2-ETHANEDIOL
lig 29
EDO
A
523 41,2-ETHANEDIOL
lig 30
NA
A
524 1SODIUM ION
lig 31
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
B
508 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
CA
B
509 1CALCIUM ION
lig 34
CA
B
510 1CALCIUM ION
lig 35
CA
B
511 1CALCIUM ION
lig 36
CA
B
512 1CALCIUM ION
lig 37
CA
B
513 1CALCIUM ION
lig 38
CA
B
514 1CALCIUM ION
lig 39
CA
B
515 1CALCIUM ION
lig 40
CA
B
516 1CALCIUM ION
lig 41
CA
B
517 1CALCIUM ION
lig 42
EDO
B
518 41,2-ETHANEDIOL
lig 43
EDO
B
519 41,2-ETHANEDIOL
lig 44
EDO
B
520 41,2-ETHANEDIOL
lig 45
NA
B
521 1SODIUM ION