Analysis of Ligand-Protein Contacts in PDB entry:
6VGN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 35 ligands in PDB entry 6VGN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
R0M
V
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 2
WFP
V
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 3
ALO
V
3 7ALLO-THREONINE
lig 4
YCP
V
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 5
MP8
V
7 8(4R)-4-METHYL-L-PROLINE
lig 6
R0M
W
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 7
WFP
W
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 8
ALO
W
3 7ALLO-THREONINE
lig 9
YCP
W
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 10
MP8
W
7 8(4R)-4-METHYL-L-PROLINE
lig 11
R0M
X
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 12
WFP
X
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 13
ALO
X
3 7ALLO-THREONINE
lig 14
YCP
X
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 15
MP8
X
7 8(4R)-4-METHYL-L-PROLINE
lig 16
R0M
Y
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 17
WFP
Y
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 18
ALO
Y
3 7ALLO-THREONINE
lig 19
YCP
Y
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 20
MP8
Y
7 8(4R)-4-METHYL-L-PROLINE
lig 21
R0M
Z
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 22
WFP
Z
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 23
ALO
Z
3 7ALLO-THREONINE
lig 24
YCP
Z
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 25
MP8
Z
7 8(4R)-4-METHYL-L-PROLINE
lig 26
R0M
a
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 27
WFP
a
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 28
ALO
a
3 7ALLO-THREONINE
lig 29
YCP
a
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 30
MP8
a
7 8(4R)-4-METHYL-L-PROLINE
lig 31
R0M
b
1 8(2E,4E)-HEPTA-2,4-DIENOIC ACID
lig 32
WFP
b
2 133,5-DIFLUORO-L-PHENYLALANINE
lig 33
ALO
b
3 7ALLO-THREONINE
lig 34
YCP
b
5 8(2S)-PIPERIDINE-2-CARBOXYLIC ACID
lig 35
MP8
b
7 8(4R)-4-METHYL-L-PROLINE