Analysis of Ligand-Protein Contacts in PDB entry:
6VJ7


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 119 ligands in PDB entry 6VJ7. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
BMA
E
4 11BETA-D-MANNOPYRANOSE
lig 5
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 8
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 11
BMA
G
4 11BETA-D-MANNOPYRANOSE
lig 12
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 15
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
FUC
I
2 10ALPHA-L-FUCOPYRANOSE
lig 17
NAG
I
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
FUC
J
2 10ALPHA-L-FUCOPYRANOSE
lig 20
NAG
J
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
ZN
A
501 1ZINC ION
lig 26
FE
A
502 1FE (III) ION
lig 27
SO4
A
503 5SULFATE ION
lig 28
SO4
A
504 5SULFATE ION
lig 29
SO4
A
505 5SULFATE ION
lig 30
GOL
A
506 6GLYCEROL
lig 31
GOL
A
507 6GLYCEROL
lig 32
GOL
A
508 6GLYCEROL
lig 33
GOL
A
509 6GLYCEROL
lig 34
EDO
A
510 41,2-ETHANEDIOL
lig 35
EDO
A
511 41,2-ETHANEDIOL
lig 36
EDO
A
512 41,2-ETHANEDIOL
lig 37
EDO
A
513 41,2-ETHANEDIOL
lig 38
EDO
A
514 41,2-ETHANEDIOL
lig 39
PGE
A
515 7TRIETHYLENE GLYCOL
lig 40
NAG
A
520 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
A
521 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
ANP
A
525 31PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE
lig 43
PG4
A
526 13TETRAETHYLENE GLYCOL
lig 44
NA
A
527 1SODIUM ION
lig 45
ZN
B
501 1ZINC ION
lig 46
FE
B
502 1FE (III) ION
lig 47
SO4
B
503 5SULFATE ION
lig 48
SO4
B
504 5SULFATE ION
lig 49
SO4
B
505 5SULFATE ION
lig 50
SO4
B
506 5SULFATE ION
lig 51
EDO
B
507 41,2-ETHANEDIOL
lig 52
EDO
B
508 41,2-ETHANEDIOL
lig 53
EDO
B
509 41,2-ETHANEDIOL
lig 54
EDO
B
510 41,2-ETHANEDIOL
lig 55
EDO
B
511 41,2-ETHANEDIOL
lig 56
EDO
B
512 41,2-ETHANEDIOL
lig 57
PGE
B
513 7TRIETHYLENE GLYCOL
lig 58
PGE
B
514 7TRIETHYLENE GLYCOL
lig 59
NAG
B
522 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 60
NA
B
526 1SODIUM ION
lig 61
SO4
C
501 5SULFATE ION
lig 62
NAG
C
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
ZN
C
503 1ZINC ION
lig 64
FE
C
504 1FE (III) ION
lig 65
SO4
C
505 5SULFATE ION
lig 66
SO4
C
506 5SULFATE ION
lig 67
SO4
C
507 5SULFATE ION
lig 68
SO4
C
508 5SULFATE ION
lig 69
SO4
C
509 5SULFATE ION
lig 70
SO4
C
510 5SULFATE ION
lig 71
SO4
C
511 5SULFATE ION
lig 72
GOL
C
512 6GLYCEROL
lig 73
EDO
C
513 41,2-ETHANEDIOL
lig 74
EDO
C
514 41,2-ETHANEDIOL
lig 75
EDO
C
515 41,2-ETHANEDIOL
lig 76
EDO
C
516 41,2-ETHANEDIOL
lig 77
EDO
C
517 41,2-ETHANEDIOL
lig 78
EDO
C
518 41,2-ETHANEDIOL
lig 79
EDO
C
519 41,2-ETHANEDIOL
lig 80
EDO
C
520 41,2-ETHANEDIOL
lig 81
PGE
C
521 10TRIETHYLENE GLYCOL
lig 82
PGE
C
522 7TRIETHYLENE GLYCOL
lig 83
NAG
C
526 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 84
IPA
C
529 4ISOPROPYL ALCOHOL
lig 85
ANP
C
530 15PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE
lig 86
NA
C
531 1SODIUM ION
lig 87
PG4
D
701 13TETRAETHYLENE GLYCOL
lig 88
ZN
D
702 1ZINC ION
lig 89
FE
D
703 1FE (III) ION
lig 90
SO4
D
704 5SULFATE ION
lig 91
SO4
D
705 5SULFATE ION
lig 92
SO4
D
706 5SULFATE ION
lig 93
SO4
D
707 5SULFATE ION
lig 94
SO4
D
708 5SULFATE ION
lig 95
SO4
D
709 5SULFATE ION
lig 96
SO4
D
710 5SULFATE ION
lig 97
SO4
D
711 5SULFATE ION
lig 98
SO4
D
712 5SULFATE ION
lig 99
GOL
D
713 6GLYCEROL
lig 100
GOL
D
714 6GLYCEROL
lig 101
GOL
D
715 6GLYCEROL
lig 102
GOL
D
716 6GLYCEROL
lig 103
EDO
D
717 41,2-ETHANEDIOL
lig 104
EDO
D
718 41,2-ETHANEDIOL
lig 105
EDO
D
719 41,2-ETHANEDIOL
lig 106
EDO
D
720 41,2-ETHANEDIOL
lig 107
EDO
D
721 41,2-ETHANEDIOL
lig 108
EDO
D
722 41,2-ETHANEDIOL
lig 109
EDO
D
723 41,2-ETHANEDIOL
lig 110
EDO
D
724 41,2-ETHANEDIOL
lig 111
EDO
D
725 41,2-ETHANEDIOL
lig 112
EDO
D
726 41,2-ETHANEDIOL
lig 113
EDO
D
727 41,2-ETHANEDIOL
lig 114
EDO
D
728 41,2-ETHANEDIOL
lig 115
PGE
D
729 7TRIETHYLENE GLYCOL
lig 116
PGE
D
730 7TRIETHYLENE GLYCOL
lig 117
NAG
D
733 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 118
NAG
D
734 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 119
ANP
D
735 14PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE