Analysis of Ligand-Protein Contacts in PDB entry:
6VPL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 13 ligands in PDB entry 6VPL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
288 11PHOSPHOTHREONINE
lig 2
TPO
B
288 11PHOSPHOTHREONINE
lig 3
MG
A
601 1MAGNESIUM ION
lig 4
ANP
A
602 31PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE
lig 5
MLA
A
603 7MALONIC ACID
lig 6
MG
A
604 1MAGNESIUM ION
lig 7
MG
A
605 1MAGNESIUM ION
lig 8
R7D
A
606 28 PHENYL]ACETYL}-N-[(PYRIDIN-2-YL)METHYL]-L
lig 9
ANP
B
601 31PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE
lig 10
GOL
B
602 6GLYCEROL
lig 11
MLA
B
603 7MALONIC ACID
lig 12
MG
B
604 1MAGNESIUM ION
lig 13
R7D
B
605 28 PHENYL]ACETYL}-N-[(PYRIDIN-2-YL)METHYL]-L