Analysis of Ligand-Protein Contacts in PDB entry:
6VPM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 10 ligands in PDB entry 6VPM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
288 11PHOSPHOTHREONINE
lig 2
TPO
B
288 11PHOSPHOTHREONINE
lig 3
MG
A
601 1MAGNESIUM ION
lig 4
AMP
A
602 23ADENOSINE MONOPHOSPHATE
lig 5
R74
A
603 26 YL)METHYL]-L-CYSTEINAMIDE
lig 6
MLA
A
604 7MALONIC ACID
lig 7
MG
A
605 1MAGNESIUM ION
lig 8
AMP
B
601 23ADENOSINE MONOPHOSPHATE
lig 9
R74
B
602 26 YL)METHYL]-L-CYSTEINAMIDE
lig 10
MLA
B
603 7MALONIC ACID