Analysis of Ligand-Protein Contacts in PDB entry:
6VRD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 6VRD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OMC
C
1 18O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 2
N7X
C
2 25 2'-O-(2-METHOXYETHYL)-5-METHYLCYTIDINE
lig 3
T39
C
3 252'-O-METHOXYETHYLENE THYMIDINE 5'-MONOPHOS
lig 4
C5L
C
4 25 PHOSPHATE)
lig 5
A2M
C
5 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 6
SC
C
6 192-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE
lig 7
PST
C
7 20THYMIDINE-5'-THIOPHOSPHATE
lig 8
SC
C
8 192-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE
lig 9
AS
C
9 212-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE
lig 10
SC
C
10 192-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE
lig 11
SC
C
11 192-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE
lig 12
SC
C
12 192-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE
lig 13
AS
C
13 212-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE
lig 14
SC
C
14 192-DEOXY-CYTIDINE-5'-THIOPHOSPHORATE
lig 15
PST
C
15 20THYMIDINE-5'-THIOPHOSPHATE
lig 16
6OO
C
16 212'-O-METHYL-5'-O-THIOPHOSPHONOCYTIDINE
lig 17
RFJ
C
17 242'-O-METHYL-5'-O-THIOPHOSPHONOGUANOSINE
lig 18
6OO
C
18 212'-O-METHYL-5'-O-THIOPHOSPHONOCYTIDINE
lig 19
6OO
C
19 212'-O-METHYL-5'-O-THIOPHOSPHONOCYTIDINE
lig 20
6NW
C
20 232'-O-METHYL-5'-O-THIOPHOSPHONOADENOSINE
lig 21
SO4
A
301 5SULFATE ION
lig 22
SO4
A
302 5SULFATE ION
lig 23
GOL
A
303 6GLYCEROL
lig 24
PEG
C
201 7DI(HYDROXYETHYL)ETHER
lig 25
SO4
C
202 5SULFATE ION