Analysis of Ligand-Protein Contacts in PDB entry:
6VYD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 40 ligands in PDB entry 6VYD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MG
A
401 1MAGNESIUM ION
lig 2
MG
A
402 1MAGNESIUM ION
lig 3
MG
A
403 1MAGNESIUM ION
lig 4
SO4
A
404 5SULFATE ION
lig 5
NA
A
405 1SODIUM ION
lig 6
POP
A
406 9PYROPHOSPHATE 2-
lig 7
BTM
A
407 14N-BENZYL-N,N-DIETHYLETHANAMINIUM
lig 8
EDO
A
408 41,2-ETHANEDIOL
lig 9
EDO
A
409 41,2-ETHANEDIOL
lig 10
EDO
A
410 41,2-ETHANEDIOL
lig 11
EDO
A
411 41,2-ETHANEDIOL
lig 12
EDO
A
412 41,2-ETHANEDIOL
lig 13
EDO
A
413 41,2-ETHANEDIOL
lig 14
EDO
A
414 41,2-ETHANEDIOL
lig 15
EDO
A
415 41,2-ETHANEDIOL
lig 16
EDO
A
416 41,2-ETHANEDIOL
lig 17
EDO
A
417 41,2-ETHANEDIOL
lig 18
EDO
A
418 41,2-ETHANEDIOL
lig 19
MG
B
401 1MAGNESIUM ION
lig 20
MG
B
402 1MAGNESIUM ION
lig 21
MG
B
403 1MAGNESIUM ION
lig 22
NA
B
404 1SODIUM ION
lig 23
CL
B
405 1CHLORIDE ION
lig 24
CL
B
406 1CHLORIDE ION
lig 25
CL
B
407 1CHLORIDE ION
lig 26
POP
B
408 9PYROPHOSPHATE 2-
lig 27
BTM
B
409 14N-BENZYL-N,N-DIETHYLETHANAMINIUM
lig 28
EDO
B
410 41,2-ETHANEDIOL
lig 29
EDO
B
411 41,2-ETHANEDIOL
lig 30
EDO
B
412 41,2-ETHANEDIOL
lig 31
EDO
B
413 41,2-ETHANEDIOL
lig 32
EDO
B
414 41,2-ETHANEDIOL
lig 33
EDO
B
415 41,2-ETHANEDIOL
lig 34
EDO
B
416 41,2-ETHANEDIOL
lig 35
EDO
B
417 41,2-ETHANEDIOL
lig 36
EDO
B
418 41,2-ETHANEDIOL
lig 37
EDO
B
419 41,2-ETHANEDIOL
lig 38
EDO
B
420 41,2-ETHANEDIOL
lig 39
EDO
B
421 41,2-ETHANEDIOL
lig 40
EDO
B
422 41,2-ETHANEDIOL