Analysis of Ligand-Protein Contacts in PDB entry:
6Y6A


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 83 ligands in PDB entry 6Y6A. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SIA
A
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 2
CL
A
402 1CHLORIDE ION
lig 3
SIA
B
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 4
CL
B
402 1CHLORIDE ION
lig 5
SIA
C
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 6
CL
C
402 1CHLORIDE ION
lig 7
CL
C
403 1CHLORIDE ION
lig 8
CL
C
404 1CHLORIDE ION
lig 9
MG
C
405 1MAGNESIUM ION
lig 10
CL
D
301 1CHLORIDE ION
lig 11
SIA
E
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
SIA
F
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 13
CL
F
402 1CHLORIDE ION
lig 14
CL
F
403 1CHLORIDE ION
lig 15
SIA
G
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 16
CL
G
402 1CHLORIDE ION
lig 17
CL
G
403 1CHLORIDE ION
lig 18
CL
H
301 1CHLORIDE ION
lig 19
CL
H
302 1CHLORIDE ION
lig 20
SIA
I
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 21
CL
I
402 1CHLORIDE ION
lig 22
SIA
J
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 23
CL
J
402 1CHLORIDE ION
lig 24
CL
J
403 1CHLORIDE ION
lig 25
SIA
K
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 26
SIA
L
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 27
CL
L
402 1CHLORIDE ION
lig 28
SIA
M
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 29
CL
M
402 1CHLORIDE ION
lig 30
CL
M
403 1CHLORIDE ION
lig 31
SIA
N
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 32
CL
N
402 1CHLORIDE ION
lig 33
CL
N
403 1CHLORIDE ION
lig 34
SIA
O
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 35
CL
O
402 1CHLORIDE ION
lig 36
CL
P
301 1CHLORIDE ION
lig 37
CL
P
302 1CHLORIDE ION
lig 38
SIA
Q
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 39
CL
Q
402 1CHLORIDE ION
lig 40
CL
Q
403 1CHLORIDE ION
lig 41
SIA
R
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 42
CL
R
402 1CHLORIDE ION
lig 43
SIA
S
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 44
CL
S
402 1CHLORIDE ION
lig 45
CL
S
403 1CHLORIDE ION
lig 46
SIA
T
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 47
CL
T
402 1CHLORIDE ION
lig 48
CL
U
301 1CHLORIDE ION
lig 49
CL
U
302 1CHLORIDE ION
lig 50
SIA
V
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 51
CL
V
402 1CHLORIDE ION
lig 52
CL
W
301 1CHLORIDE ION
lig 53
CL
W
302 1CHLORIDE ION
lig 54
SIA
X
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 55
CL
X
402 1CHLORIDE ION
lig 56
CL
X
403 1CHLORIDE ION
lig 57
SIA
Y
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 58
CL
Y
402 1CHLORIDE ION
lig 59
CL
Y
403 1CHLORIDE ION
lig 60
SIA
Z
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 61
CL
Z
402 1CHLORIDE ION
lig 62
CL
Z
403 1CHLORIDE ION
lig 63
SIA
a
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 64
SIA
b
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 65
SIA
c
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 66
CL
c
402 1CHLORIDE ION
lig 67
SIA
d
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 68
CL
d
402 1CHLORIDE ION
lig 69
CL
d
403 1CHLORIDE ION
lig 70
SIA
e
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 71
CL
e
402 1CHLORIDE ION
lig 72
CL
e
403 1CHLORIDE ION
lig 73
SIA
f
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 74
CL
f
402 1CHLORIDE ION
lig 75
CL
f
403 1CHLORIDE ION
lig 76
CL
g
301 1CHLORIDE ION
lig 77
CL
h
301 1CHLORIDE ION
lig 78
SIA
j
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 79
CL
j
402 1CHLORIDE ION
lig 80
CL
j
403 1CHLORIDE ION
lig 81
SIA
n
401 21N-ACETYL-ALPHA-NEURAMINIC ACID
lig 82
CL
n
402 1CHLORIDE ION
lig 83
CL
n
403 1CHLORIDE ION