Analysis of Ligand-Protein Contacts in PDB entry:
6Y8C


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 11 ligands in PDB entry 6Y8C. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
197 11PHOSPHOTHREONINE
lig 2
SEP
A
338 10PHOSPHOSERINE
lig 3
MG
A
401 1MAGNESIUM ION
lig 4
ATP
A
402 27ADENOSINE-5'-TRIPHOSPHATE
lig 5
DMS
A
403 4DIMETHYL SULFOXIDE
lig 6
DMS
A
404 4DIMETHYL SULFOXIDE
lig 7
DMS
A
405 4DIMETHYL SULFOXIDE
lig 8
DMS
A
406 4DIMETHYL SULFOXIDE
lig 9
MPD
A
407 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 10
MPD
A
408 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 11
DMS
B
101 4DIMETHYL SULFOXIDE