Analysis of Ligand-Protein Contacts in PDB entry:
6Y8Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 16 ligands in PDB entry 6Y8Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
121 10PHOSPHOSERINE
lig 2
NI
A
601 1NICKEL (II) ION
lig 3
CA
A
602 1CALCIUM ION
lig 4
G1P
A
603 161-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
lig 5
GOL
A
604 6GLYCEROL
lig 6
GOL
A
605 6GLYCEROL
lig 7
GOL
A
606 6GLYCEROL
lig 8
GOL
A
607 6GLYCEROL
lig 9
GOL
A
608 6GLYCEROL
lig 10
GOL
A
609 6GLYCEROL
lig 11
ACT
A
610 4ACETATE ION
lig 12
NA
A
611 1SODIUM ION
lig 13
NA
A
612 1SODIUM ION
lig 14
NA
A
613 1SODIUM ION
lig 15
NA
A
614 1SODIUM ION
lig 16
NA
A
615 1SODIUM ION